Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHN38_RS01290 Genome accession   NZ_CP107765
Coordinates   261810..262829 (-) Length   339 a.a.
NCBI ID   WP_330280951.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00588     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 256810..267829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS01270 (OHN38_01275) - 257484..258557 (-) 1074 WP_330280948.1 glycosidase -
  OHN38_RS01275 (OHN38_01280) - 258564..259457 (-) 894 WP_330280949.1 carbohydrate ABC transporter permease -
  OHN38_RS01280 (OHN38_01285) - 259459..260418 (-) 960 WP_242710254.1 sugar ABC transporter permease -
  OHN38_RS01285 (OHN38_01290) - 260428..261699 (-) 1272 WP_330280950.1 extracellular solute-binding protein -
  OHN38_RS01290 (OHN38_01295) cytR 261810..262829 (-) 1020 WP_330280951.1 LacI family DNA-binding transcriptional regulator Regulator
  OHN38_RS01295 (OHN38_01300) - 263048..263746 (-) 699 WP_330280952.1 N-acyl homoserine lactonase family protein -
  OHN38_RS01300 (OHN38_01305) - 263812..264258 (-) 447 WP_330285177.1 GNAT family N-acetyltransferase -
  OHN38_RS01305 (OHN38_01310) - 264267..264773 (-) 507 WP_330280953.1 GNAT family N-acetyltransferase -
  OHN38_RS01310 (OHN38_01315) - 264777..265346 (-) 570 WP_330280954.1 dihydrofolate reductase family protein -
  OHN38_RS01315 (OHN38_01320) - 265501..266550 (+) 1050 WP_330280955.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35659.37 Da        Isoelectric Point: 5.4551

>NTDB_id=645819 OHN38_RS01290 WP_330280951.1 261810..262829(-) (cytR) [Streptomyces sp. NBC_00588]
MTRRPTIGDVAKLAGVSRATVSFVLNNRPGVAVDTQRRVRSAAEGLGWTPSSSARALSTGRARAVGLVLAREPELIGTDP
FFPAFMAGIETVISETGDGLMLQMSRPENEVDTYRRLAADRRVDGVFLTDLRADDARPALVAELGLPAVAVGAPDSGTGL
PSVNLDDRPAVREAVRHLVDLGHRDIAHVAGPDEFVHARRRRQAWSDALAEAGLPEGTLLPGGFTAEGGARATRMLLERP
TPPTAIVYGNDLSATAGMAVAQDAGLRLPQDLSVVGFDDVPLASYTNPPLTTCRANPVSWGRASAQALVQLIETGTTADM
DLEPATLVVRGSTGPAPVR

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=645819 OHN38_RS01290 WP_330280951.1 261810..262829(-) (cytR) [Streptomyces sp. NBC_00588]
ATGACCCGTCGTCCCACCATCGGTGACGTGGCGAAGCTGGCCGGAGTCTCCCGCGCCACCGTGTCGTTCGTGCTCAACAA
CCGGCCCGGCGTCGCCGTGGACACCCAGCGGCGCGTCCGTTCGGCGGCCGAGGGTCTGGGGTGGACGCCGAGTTCCAGCG
CCCGCGCGCTGTCCACGGGCCGGGCCCGCGCCGTGGGCCTGGTGCTCGCCCGCGAGCCGGAGCTCATCGGCACCGACCCG
TTCTTCCCCGCGTTCATGGCGGGCATCGAGACGGTCATATCGGAGACCGGCGACGGCCTGATGCTGCAGATGAGCCGCCC
CGAGAACGAGGTGGACACCTACCGCAGGCTCGCCGCCGACCGGCGCGTGGACGGCGTCTTCCTCACCGACCTGCGCGCCG
ACGACGCGCGTCCGGCGCTCGTCGCCGAACTGGGCCTGCCGGCCGTGGCCGTGGGGGCGCCGGACTCCGGCACCGGTCTG
CCGTCGGTCAACCTCGACGACCGTCCCGCCGTCCGCGAGGCCGTACGCCACCTCGTCGACCTGGGACACCGCGACATCGC
CCACGTGGCCGGGCCCGACGAGTTCGTCCACGCCCGGCGCCGCCGCCAGGCCTGGAGCGACGCGCTCGCCGAGGCGGGGC
TGCCCGAGGGGACGTTACTGCCGGGCGGCTTCACCGCCGAGGGCGGAGCGCGGGCCACCCGGATGCTGCTGGAGCGCCCG
ACCCCTCCGACGGCCATCGTCTACGGCAACGACCTGTCGGCCACGGCCGGGATGGCGGTCGCCCAGGACGCCGGGCTGCG
GCTGCCGCAGGACCTGTCCGTGGTCGGCTTCGACGACGTACCGCTCGCCTCCTACACCAACCCCCCGCTGACCACCTGCC
GAGCCAACCCGGTCTCCTGGGGCCGGGCGTCCGCCCAGGCGCTGGTGCAGCTGATCGAGACCGGCACCACCGCCGACATG
GACCTCGAACCGGCCACCCTCGTGGTGCGCGGCTCCACCGGCCCGGCGCCGGTGCGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-333)

Bacterial regulatory proteins, lacI family (LacI)

(6-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.069

100

0.381
  cytR Vibrio parahaemolyticus RIMD 2210633

37.026

100

0.375