Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L1A15_RS08780 Genome accession   NZ_CP090884
Coordinates   1709042..1710109 (-) Length   355 a.a.
NCBI ID   WP_000159555.1    Uniprot ID   A0A0I8P776
Organism   Streptococcus pneumoniae strain MD5403     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704042..1715109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A15_RS08765 (L1A15_08765) treR 1705830..1706540 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  L1A15_RS08770 (L1A15_08770) - 1706695..1708030 (+) 1336 Protein_1741 ISL3 family transposase -
  L1A15_RS08775 (L1A15_08775) amiF 1708105..1709031 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  L1A15_RS08780 (L1A15_08780) amiE 1709042..1710109 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  L1A15_RS08785 (L1A15_08785) amiD 1710118..1711044 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  L1A15_RS08790 (L1A15_08790) amiC 1711044..1712540 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  L1A15_RS08795 (L1A15_08795) amiA3 1712607..1714586 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39489.14 Da        Isoelectric Point: 5.0389

>NTDB_id=645777 L1A15_RS08780 WP_000159555.1 1709042..1710109(-) (amiE) [Streptococcus pneumoniae strain MD5403]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSKTHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=645777 L1A15_RS08780 WP_000159555.1 1709042..1710109(-) (amiE) [Streptococcus pneumoniae strain MD5403]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGTATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCTT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAAAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I8P776

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.169

100

0.882
  amiE Streptococcus thermophilus LMG 18311

86.479

100

0.865
  amiE Streptococcus thermophilus LMD-9

86.479

100

0.865
  oppD Streptococcus mutans UA159

54.545

99.155

0.541