Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPB_RS10385 Genome accession   NZ_AEUT02000001
Coordinates   2054407..2055120 (-) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2049407..2060120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS11405 (SPB_2136) - 2049860..2050009 (+) 150 WP_003102372.1 hypothetical protein -
  SPB_RS10355 (SPB_2137) - 2050033..2050965 (+) 933 WP_003105306.1 Gfo/Idh/MocA family protein -
  SPB_RS10360 (SPB_2138) - 2050976..2051482 (+) 507 WP_003105183.1 GNAT family N-acetyltransferase -
  SPB_RS10365 (SPB_2139) nrdG 2051485..2052099 (+) 615 WP_003104313.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SPB_RS10370 (SPB_2140) yaaA 2052217..2052948 (-) 732 WP_003105405.1 peroxide stress protein YaaA -
  SPB_RS10375 (SPB_2141) - 2053001..2053855 (-) 855 WP_003104582.1 VOC family protein -
  SPB_RS10380 (SPB_2142) - 2054057..2054383 (+) 327 WP_003104509.1 helix-turn-helix domain-containing protein -
  SPB_RS10385 (SPB_2143) treR 2054407..2055120 (-) 714 WP_037620338.1 trehalose operon repressor Regulator
  SPB_RS10390 (SPB_2144) treP 2055342..2057327 (+) 1986 WP_003102755.1 PTS system trehalose-specific EIIBC component -
  SPB_RS10395 (SPB_2145) treC 2057395..2059020 (+) 1626 WP_003105838.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=64576 SPB_RS10385 WP_037620338.1 2054407..2055120(-) (treR) [Streptococcus parauberis NCFD 2020]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=64576 SPB_RS10385 WP_037620338.1 2054407..2055120(-) (treR) [Streptococcus parauberis NCFD 2020]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAATGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641

Multiple sequence alignment