Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA50_RS18940 Genome accession   NZ_CP107750
Coordinates   4223449..4224060 (-) Length   203 a.a.
NCBI ID   WP_327671511.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00618     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4218449..4229060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA50_RS18915 (OHA50_18920) - 4218513..4218941 (+) 429 WP_327661719.1 ATP-binding protein -
  OHA50_RS18920 (OHA50_18925) - 4219820..4220923 (-) 1104 WP_327671514.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHA50_RS18925 (OHA50_18930) fdxA 4221063..4221383 (-) 321 WP_266713752.1 ferredoxin -
  OHA50_RS18930 (OHA50_18935) - 4221524..4222528 (+) 1005 WP_327671512.1 GNAT family N-acetyltransferase -
  OHA50_RS18935 (OHA50_18940) - 4222566..4223408 (+) 843 WP_266713748.1 transglutaminase-like domain-containing protein -
  OHA50_RS18940 (OHA50_18945) vraR 4223449..4224060 (-) 612 WP_327671511.1 response regulator transcription factor Regulator
  OHA50_RS18945 (OHA50_18950) - 4224057..4225130 (-) 1074 WP_327675643.1 sensor histidine kinase -
  OHA50_RS18950 (OHA50_18955) - 4225211..4225951 (-) 741 WP_327661723.1 ABC transporter permease -
  OHA50_RS18955 (OHA50_18960) - 4225948..4226856 (-) 909 WP_327671510.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21179.44 Da        Isoelectric Point: 4.8022

>NTDB_id=645591 OHA50_RS18940 WP_327671511.1 4223449..4224060(-) (vraR) [Streptomyces sp. NBC_00618]
MSTIKVLLAEDQSMVREALAALLGLEADIEVVAQVARGDEVVAAARAHAVDVALLDIEMPGCTGIEAAAQLREVLPELKV
VVLTTFGRPGYLRSAMEAGAAAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGATN
AELATALHLSQGTVRNYLSVAIQKLAVRNRAEAVAAAREKGWL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=645591 OHA50_RS18940 WP_327671511.1 4223449..4224060(-) (vraR) [Streptomyces sp. NBC_00618]
ATGAGCACGATCAAGGTGTTGTTGGCCGAGGACCAGTCGATGGTGCGCGAGGCGCTGGCCGCGCTGCTCGGCCTCGAGGC
GGACATCGAGGTCGTCGCGCAGGTGGCGCGCGGTGACGAGGTGGTGGCGGCCGCCCGCGCGCACGCGGTGGACGTGGCGC
TCCTCGACATCGAGATGCCGGGCTGCACGGGCATCGAGGCGGCGGCCCAACTCCGTGAGGTTCTACCGGAGTTGAAGGTC
GTCGTGCTCACCACGTTCGGCCGGCCCGGCTATCTGCGCAGCGCCATGGAGGCGGGCGCGGCCGCGTTCCTGGTCAAGGA
CGCCCCGGCCGCGCAGCTCGCCGAGGCCGTACGGAAGGTGCTCGCGGGCGAACGCGTCATCGACCCCACGCTCGCGGCGG
CGGCCCTCGCGGAGGGCGCGAATCCGCTCACCGACCGCGAACGCGAGGTGCTGCGCGCGGCGGCGGACGGCGCCACCAAC
GCGGAACTGGCGACCGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGGTGGCGATCCAGAAGCTGGCGGT
GCGCAATCGGGCGGAGGCGGTGGCCGCCGCGCGGGAGAAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(142-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.365