Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   L1A11_RS06020 Genome accession   NZ_CP090881
Coordinates   1177315..1178124 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain BR1268     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172315..1183124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A11_RS06000 (L1A11_06000) - 1174649..1175635 (+) 987 WP_000204733.1 L-lactate dehydrogenase -
  L1A11_RS06005 (L1A11_06005) - 1175936..1176679 (-) 744 Protein_1187 ion channel -
  L1A11_RS06010 (L1A11_06010) - 1176726..1176980 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  L1A11_RS06015 (L1A11_06015) - 1176982..1177224 (-) 243 WP_000208080.1 DUF6290 family protein -
  L1A11_RS06020 (L1A11_06020) vicX 1177315..1178124 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  L1A11_RS06025 (L1A11_06025) micB 1178126..1179475 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L1A11_RS06030 (L1A11_06030) micA 1179468..1180172 (-) 705 WP_000722076.1 response regulator YycF Regulator
  L1A11_RS06035 (L1A11_06035) mutY 1180227..1181402 (-) 1176 WP_238878946.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=645531 L1A11_RS06020 WP_001289493.1 1177315..1178124(-) (vicX) [Streptococcus pneumoniae strain BR1268]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=645531 L1A11_RS06020 WP_001289493.1 1177315..1178124(-) (vicX) [Streptococcus pneumoniae strain BR1268]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773