Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG888_RS32820 Genome accession   NZ_CP107749
Coordinates   7186940..7187725 (-) Length   261 a.a.
NCBI ID   WP_327661174.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7181940..7192725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS32810 (OG888_32815) - 7182771..7184753 (+) 1983 WP_327672053.1 IucA/IucC family siderophore biosynthesis protein -
  OG888_RS32815 (OG888_32820) - 7184794..7186845 (+) 2052 WP_327672054.1 ATP-dependent DNA helicase -
  OG888_RS32820 (OG888_32825) dinR/lexA 7186940..7187725 (-) 786 WP_327661174.1 transcriptional repressor LexA Regulator
  OG888_RS32825 (OG888_32830) nrdR 7188256..7188801 (+) 546 WP_327661173.1 transcriptional regulator NrdR -
  OG888_RS32830 (OG888_32835) - 7188939..7191833 (+) 2895 WP_327672055.1 vitamin B12-dependent ribonucleotide reductase -
  OG888_RS32835 (OG888_32840) - 7191950..7192489 (-) 540 WP_327661171.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28136.95 Da        Isoelectric Point: 8.0892

>NTDB_id=645529 OG888_RS32820 WP_327661174.1 7186940..7187725(-) (dinR/lexA) [Streptomyces sp. NBC_00622]
MTTTADSATITAQGRAQGRLEPVHAMNDTAMSQEGPKPGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=645529 OG888_RS32820 WP_327661174.1 7186940..7187725(-) (dinR/lexA) [Streptomyces sp. NBC_00622]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGGCCGCGCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACACAGCCATGAGCCAGGAGGGCCCCAAGCCGGGGCGCTCCCTGCCCGGCCGGCCCCCAGGAATCCGCGCGGACAGCT
CGGGGCTCACGGATCGGCAGCGCCGCGTCATCGAGGTCATCCGGGACTCGGTGCAGCGTCGGGGGTACCCGCCGTCCATG
CGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACATCGTCGGTCGCGCACCAGCTGATGGCACTCGAGCGCAAGGGCTT
CCTGCGCCGGGATCCGCACCGCCCGCGCGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCGCGCAGCCCACGGACACCG
CGGGAAAGCCCGCGGCTTCGTATGTGCCCCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTGCCCCGGCAGCTCGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGGGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGAAGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTCCTGCCGCACAACTCCGCGTAC
CAGCCGATTCCCGGTGACGAGGCGACGATCCTCGGCAAGGTAGTGGCCGTTCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375