Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG888_RS13760 Genome accession   NZ_CP107749
Coordinates   3004098..3004739 (-) Length   213 a.a.
NCBI ID   WP_327664024.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999098..3009739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS13725 (OG888_13725) - 2999185..2999691 (+) 507 WP_327669869.1 HNH endonuclease -
  OG888_RS13730 (OG888_13730) - 2999764..3000723 (-) 960 WP_266721150.1 SPFH domain-containing protein -
  OG888_RS13735 (OG888_13735) - 3000860..3001294 (-) 435 WP_266721149.1 NfeD family protein -
  OG888_RS13740 (OG888_13740) - 3001630..3002178 (-) 549 Protein_2729 ABC transporter ATP-binding protein -
  OG888_RS13745 (OG888_13745) - 3002326..3003108 (+) 783 WP_327664025.1 hypothetical protein -
  OG888_RS13750 (OG888_13750) - 3003185..3003424 (-) 240 WP_267070927.1 chaplin -
  OG888_RS13755 (OG888_13755) - 3003647..3003892 (-) 246 WP_266721145.1 chaplin -
  OG888_RS13760 (OG888_13760) vraR 3004098..3004739 (-) 642 WP_327664024.1 response regulator transcription factor Regulator
  OG888_RS13765 (OG888_13765) - 3004732..3005877 (-) 1146 WP_327664023.1 GAF domain-containing sensor histidine kinase -
  OG888_RS13770 (OG888_13770) - 3006062..3006757 (+) 696 WP_327669870.1 SDR family oxidoreductase -
  OG888_RS13775 (OG888_13775) - 3006757..3007839 (+) 1083 WP_327669871.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG888_RS13780 (OG888_13780) - 3008159..3008902 (+) 744 WP_327664020.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22879.20 Da        Isoelectric Point: 5.3711

>NTDB_id=645472 OG888_RS13760 WP_327664024.1 3004098..3004739(-) (vraR) [Streptomyces sp. NBC_00622]
MADPIKVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAADGAEGVARTEELKPDVVLMDVKMPVMDGVDALRRLRELDNPAK
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLAQEETNSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=645472 OG888_RS13760 WP_327664024.1 3004098..3004739(-) (vraR) [Streptomyces sp. NBC_00622]
GTGGCTGACCCGATCAAGGTACTGCTGGTCGACGATCACCAGGTCGTCCGCCGGGGCCTGCGCACCTTCCTGGAGGTGCA
GGGCGACATCGAGGTCGTCGGCGAGGCGGCGGACGGCGCCGAAGGAGTCGCCCGCACCGAGGAGTTGAAGCCCGACGTCG
TCCTGATGGACGTCAAGATGCCGGTGATGGACGGGGTCGACGCCCTGCGCCGGCTCCGCGAACTCGACAACCCCGCCAAG
GTGTTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCCGCCCTGCGCGCGGGAGCCGCCGGTTACGTCTACAA
GGACGTGGACCCCGACGCCCTGGCCGGCGCCATCCGTTCCGTCCACGCGGGCCACATCCTGCTGCAACCCGAGGTCGCGG
GTGCCCTGTTGGCCCAGGAAGAGACCAACAGCGGGCAGGGGAGGGGCGGTTCCCTCACGGAGCGCGAGCGCGAGGTGCTC
GGCCTGATCGCCGACGGCCGCTCGAACCGGGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAAACGGTGAAGACCCATGT
CTCGAACATCCTGATGAAGCTCGACCTGGCGGACCGTACCCAGGCCGCCCTGTGGGCCGTGCGCCACGGCGCCGCGGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

47.619

98.592

0.469
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.404