Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN35_RS37330 Genome accession   NZ_CP107748
Coordinates   8238754..8239449 (+) Length   231 a.a.
NCBI ID   WP_267006502.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00623     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8233754..8244449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN35_RS37315 (OHN35_37350) - 8234564..8236054 (-) 1491 WP_406310479.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  OHN35_RS37320 (OHN35_37355) - 8236813..8237307 (+) 495 WP_267006500.1 lamin tail domain-containing protein -
  OHN35_RS37325 (OHN35_37360) - 8237523..8238782 (+) 1260 WP_326602188.1 sensor histidine kinase -
  OHN35_RS37330 (OHN35_37365) vraR 8238754..8239449 (+) 696 WP_267006502.1 response regulator transcription factor Regulator
  OHN35_RS37335 (OHN35_37370) - 8239599..8240537 (+) 939 WP_406310480.1 ATP-binding cassette domain-containing protein -
  OHN35_RS37340 (OHN35_37375) - 8240534..8241352 (+) 819 WP_326813823.1 ABC transporter permease -
  OHN35_RS37345 (OHN35_37380) - 8241581..8242051 (+) 471 WP_267006505.1 zf-HC2 domain-containing protein -
  OHN35_RS37350 (OHN35_37385) - 8242380..8243057 (+) 678 WP_326632287.1 hypothetical protein -
  OHN35_RS37355 (OHN35_37390) - 8243230..8243475 (+) 246 WP_326634408.1 ferredoxin -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24794.54 Da        Isoelectric Point: 4.4062

>NTDB_id=645442 OHN35_RS37330 WP_267006502.1 8238754..8239449(+) (vraR) [Streptomyces sp. NBC_00623]
MTIRVLLADDQALLRGTFRMLFDSADDMETVGEASNGCEAVDLAHAQHPDVLLMDIRMPEMDGLAATRLISESEDLAGVK
VLILTTFEDDEYVAEALRAGASGFLGKGARPEELLDAVRTVAGGEALLCPSAARALITRFLMQPEACPAAMHERLACLTP
RERDVLALVAMGLSNDEIADRLFISPLTAKTHVNRAMTKLDARDRAQLVVIAYQCGLVSPAMEPSGPSTSV

Nucleotide


Download         Length: 696 bp        

>NTDB_id=645442 OHN35_RS37330 WP_267006502.1 8238754..8239449(+) (vraR) [Streptomyces sp. NBC_00623]
ATGACGATCCGCGTACTGCTGGCCGATGACCAGGCCCTGCTTCGGGGCACCTTCCGGATGCTGTTCGATTCTGCGGACGA
CATGGAGACCGTGGGCGAGGCGTCCAACGGCTGCGAGGCGGTGGACCTGGCGCATGCGCAGCACCCCGATGTGCTCCTGA
TGGACATCCGCATGCCCGAGATGGACGGCCTCGCCGCGACGCGGCTGATCAGCGAGTCGGAGGACCTCGCGGGGGTCAAG
GTCCTCATCCTGACCACCTTCGAGGACGACGAGTACGTCGCCGAGGCGCTGCGTGCGGGTGCGAGCGGCTTTCTCGGCAA
GGGCGCGCGGCCCGAGGAGCTTCTCGACGCCGTGCGCACGGTCGCCGGCGGGGAGGCACTGCTGTGCCCGTCGGCCGCCC
GAGCGCTGATCACGCGATTTCTGATGCAGCCGGAAGCATGCCCGGCGGCCATGCACGAGCGGCTGGCCTGCCTGACGCCA
CGGGAACGCGATGTCCTGGCACTTGTCGCAATGGGGCTGTCGAACGACGAGATCGCCGATCGCCTGTTCATCAGCCCGCT
GACCGCCAAGACCCACGTCAACCGGGCCATGACCAAGCTGGATGCCCGTGACCGTGCCCAGCTCGTGGTCATCGCCTACC
AGTGCGGACTGGTGAGCCCGGCGATGGAGCCGAGCGGTCCGTCGACATCCGTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

94.805

0.364