Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHN35_RS17350 Genome accession   NZ_CP107748
Coordinates   3856483..3857460 (-) Length   325 a.a.
NCBI ID   WP_326627580.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00623     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3851483..3862460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN35_RS17330 (OHN35_17355) mshB 3851658..3852602 (-) 945 WP_326814979.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OHN35_RS17335 (OHN35_17360) - 3852666..3852860 (-) 195 WP_030915260.1 hypothetical protein -
  OHN35_RS17340 (OHN35_17365) - 3853064..3855196 (+) 2133 WP_328920363.1 prolyl oligopeptidase family serine peptidase -
  OHN35_RS17345 (OHN35_17370) - 3855357..3856493 (-) 1137 WP_326627578.1 dipeptide ABC transporter ATP-binding protein -
  OHN35_RS17350 (OHN35_17375) amiE 3856483..3857460 (-) 978 WP_326627580.1 ABC transporter ATP-binding protein Regulator
  OHN35_RS17355 (OHN35_17380) - 3857474..3858448 (-) 975 WP_030915250.1 ABC transporter permease -
  OHN35_RS17360 (OHN35_17385) - 3858441..3859364 (-) 924 WP_267002285.1 ABC transporter permease -
  OHN35_RS17365 (OHN35_17390) - 3859460..3861097 (-) 1638 WP_326627582.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35802.64 Da        Isoelectric Point: 6.5871

>NTDB_id=645401 OHN35_RS17350 WP_326627580.1 3856483..3857460(-) (amiE) [Streptomyces sp. NBC_00623]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAIMGILDMPPGKISSGEIIFKGRDLLKLKT
EERRKIRGQEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSRKDARTKAIELMDRVRIPAAKERVGNYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADYIAVMYAGRIVESAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFNPRCPLAQDICRGEVPPLFEVAQHRESACYFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=645401 OHN35_RS17350 WP_326627580.1 3856483..3857460(-) (amiE) [Streptomyces sp. NBC_00623]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGGGTGGCCAAAGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCGGTCCTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACCGCACAGGCGATCATGG
GCATTCTCGACATGCCGCCGGGGAAGATCAGCAGCGGCGAGATCATCTTCAAGGGCCGCGATCTGCTGAAGCTCAAGACC
GAGGAGCGCCGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTGTCGTCCCTCAACCCCGTGCTCAG
CGTGGGGGACCAGCTCGGCGAGATGTTCGTCGTGCACCGAGGGATGTCCCGCAAGGACGCCCGGACGAAGGCCATCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCGAAGGAACGCGTCGGGAACTACCCGCACCAGTTCTCCGGTGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCCTCGCTGATCATCGCGGACGAACCCACCACCGCCCTCGATGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCCGAGCTCCAGCGCGAGCTCAACATGGGGCTCATCCTGATCACCCACGACC
TGGGCGTGGTCGCGGACGTCGCCGACTACATCGCCGTGATGTACGCGGGCCGGATCGTGGAGTCGGCCCCCGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCGTACACCAAGGGCCTCCTCCAGTCGATCCCACGGCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGCTGGCCC
AGGACATCTGCCGTGGCGAGGTGCCGCCGCTGTTCGAGGTGGCCCAGCACCGCGAGAGCGCCTGCTACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.975

98.769

0.474
  amiE Streptococcus thermophilus LMG 18311

47.352

98.769

0.468
  amiE Streptococcus thermophilus LMD-9

47.352

98.769

0.468
  oppD Streptococcus mutans UA159

48.101

97.231

0.468