Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   H7R10_RS03940 Genome accession   NZ_AP021933
Coordinates   839259..840458 (-) Length   399 a.a.
NCBI ID   WP_004018097.1    Uniprot ID   -
Organism   Escherichia coli strain WP2-W18-ESBL-08     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 834259..845458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R10_RS03930 (WP2W18E08_07720) - 834656..838330 (+) 3675 WP_250952255.1 CDP-glycerol glycerophosphotransferase family protein -
  H7R10_RS03935 (WP2W18E08_07730) - 838425..839213 (+) 789 WP_000150096.1 acyltransferase -
  H7R10_RS03940 (WP2W18E08_07740) kpsS 839259..840458 (-) 1200 WP_004018097.1 capsular biosynthesis protein Regulator
  H7R10_RS03945 (WP2W18E08_07750) - 840493..842520 (-) 2028 WP_113248510.1 capsular polysaccharide biosynthesis protein -
  H7R10_RS03950 (WP2W18E08_07760) kdsB 842517..843257 (-) 741 WP_000030752.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7R10_RS03955 (WP2W18E08_07770) - 843267..844943 (-) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 47701.29 Da        Isoelectric Point: 10.1063

>NTDB_id=64540 H7R10_RS03940 WP_004018097.1 839259..840458(-) (kpsS) [Escherichia coli strain WP2-W18-ESBL-08]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYCTLIHLFKIY

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=64540 H7R10_RS03940 WP_004018097.1 839259..840458(-) (kpsS) [Escherichia coli strain WP2-W18-ESBL-08]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGCTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACCCAGGTTAATGCGGTTTATTATTGCACACTCATACATTTGTTTAAAATTTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.494

0.388

Multiple sequence alignment