Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SPB_RS04545 Genome accession   NZ_AEUT02000001
Coordinates   903575..905377 (-) Length   600 a.a.
NCBI ID   WP_003105486.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 898575..910377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS04515 (SPB_0930) - 898710..898907 (-) 198 WP_003106105.1 thiamine phosphate synthase -
  SPB_RS11480 - 899141..899395 (-) 255 WP_254655066.1 hypothetical protein -
  SPB_RS11585 (SPB_0932) - 899380..899502 (-) 123 WP_003104426.1 hypothetical protein -
  SPB_RS11630 - 899754..900326 (-) 573 Protein_913 ECF transporter S component -
  SPB_RS04530 (SPB_0936) - 900727..901236 (-) 510 WP_003103921.1 HAD family hydrolase -
  SPB_RS04535 (SPB_0938) - 901391..902632 (-) 1242 WP_037621160.1 OFA family MFS transporter -
  SPB_RS04540 (SPB_0939) - 902766..903404 (-) 639 WP_003106091.1 HAD family phosphatase -
  SPB_RS04545 (SPB_0940) pepF 903575..905377 (-) 1803 WP_003105486.1 oligoendopeptidase F Regulator
  SPB_RS04550 (SPB_0941) - 905403..906338 (-) 936 WP_003103858.1 competence protein CoiA -
  SPB_RS04555 (SPB_0942) - 906411..907556 (-) 1146 WP_003102523.1 MFS transporter -
  SPB_RS04560 (SPB_0943) - 907656..908372 (-) 717 WP_003105924.1 pseudouridine synthase -
  SPB_RS04565 (SPB_0944) nagB 908450..909154 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  SPB_RS04570 (SPB_0945) queA 909346..910374 (+) 1029 WP_003104379.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69577.44 Da        Isoelectric Point: 4.6239

>NTDB_id=64540 SPB_RS04545 WP_003105486.1 903575..905377(-) (pepF) [Streptococcus parauberis NCFD 2020]
MTDNRSHLDEKYTWDLSTIFKTDEEFETELKVLNQDADAAQKYAGHLLDSSKMLFEITNSQLELARRIEKVYVYASMKND
QDTTVAKYQEYQAKASSLYAKFGQVFSFYEPEFMTMSTEQLDTFKAEESQLELYNHYFEKLLKYKEHVLSQREEELLAGA
QEIFNGAEETFSILDNADLIFPIVKDDNGKEVEITHGNFISLMESKDRNVRKAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYQARVHKYDSARQAAMSANFIPEAVYDTLLSSVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETNLDMTYDEAIE
KVQTVLEVFGKEYSDRVNRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLYTLIHETGHSLHSTLTREN
QPYVYGDYSIFLAEIASTTNENILTEALLKEVADDKTRFAILNNYLDGFRGSVFRQTQFAEFEHAIHQADQNGEVLTSEY
INNLYAELNQKYYGLAKEDNHFIQYEWARIPHFYYNYYVYQYSTGFAAASYLANKIVHGSQEDIDAYLSYLKAGNSDYPL
EVIAKAGVDMTQEDYLDQAFAVFEARLTELEELVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=64540 SPB_RS04545 WP_003105486.1 903575..905377(-) (pepF) [Streptococcus parauberis NCFD 2020]
ATGACAGACAATCGTAGTCATTTAGATGAAAAGTACACTTGGGATTTAAGTACAATTTTCAAAACAGATGAAGAATTTGA
AACTGAACTAAAGGTCTTAAATCAGGATGCTGATGCAGCGCAAAAATATGCTGGTCATTTATTAGATTCAAGTAAAATGT
TGTTTGAAATTACGAATAGTCAGCTTGAATTGGCGCGTCGCATTGAAAAAGTCTATGTTTATGCATCAATGAAAAACGAT
CAAGATACTACCGTAGCCAAATATCAAGAGTATCAAGCAAAAGCATCTAGTTTATATGCAAAATTTGGGCAAGTTTTCTC
ATTTTATGAGCCTGAATTTATGACCATGTCAACTGAACAATTAGATACTTTTAAAGCTGAAGAAAGTCAATTGGAACTTT
ACAATCACTACTTTGAAAAATTATTAAAATATAAAGAGCATGTTTTGTCTCAACGTGAGGAAGAACTTTTAGCTGGTGCA
CAAGAAATCTTTAATGGGGCAGAAGAAACATTTAGTATTTTGGATAATGCCGATTTGATATTCCCAATTGTGAAAGATGA
TAATGGTAAGGAAGTTGAAATCACACATGGTAACTTTATCAGTTTGATGGAATCAAAAGATCGTAATGTGCGCAAAGCTG
CTTATGAAGCAATGTATAGTACTTATGAACAATTTCAACATACTTACGCCAAAACACTTCAAACAAATGTAAAAGTACAA
AACTATCAAGCGCGTGTTCATAAATATGACTCTGCTCGCCAAGCAGCAATGTCTGCAAATTTCATTCCTGAAGCAGTTTA
TGACACTTTACTTTCATCAGTAAATAAACATTTACCATTATTACATCGTTACTTGAAATTAAGACAAGAAGTTCTTGGTT
TGGATGAACTTAAAATGTATGATGTTTATACACCATTATCTGAGACAAATCTTGATATGACATATGATGAAGCAATTGAG
AAAGTACAAACTGTTTTAGAAGTGTTTGGTAAGGAATATTCAGACCGAGTAAATCGTGCATTCACAGAACGTTGGATTGA
TGTTCATGTTAATAAAGGTAAACGTTCAGGTGCCTATTCAGGTGGATCATATGATACAAATGCATTTATGCTACTTAACT
GGCAAGATAATCTTGATAACCTTTATACACTGATTCATGAAACTGGCCACAGCCTACATTCAACTTTAACTAGAGAAAAT
CAACCATATGTTTATGGTGATTATAGTATCTTCTTGGCAGAAATTGCATCGACAACAAATGAAAATATTTTAACTGAAGC
TCTCTTGAAAGAAGTAGCTGATGATAAAACTCGTTTTGCCATTTTAAATAATTATTTGGATGGCTTTAGAGGTTCTGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCATGCGATTCACCAAGCTGATCAAAATGGTGAAGTCTTAACAAGTGAATAC
ATTAATAATTTATACGCCGAACTTAATCAAAAATATTATGGACTAGCTAAAGAAGATAATCATTTTATTCAATATGAGTG
GGCTAGAATTCCACATTTCTACTATAATTATTATGTTTATCAATACTCAACTGGTTTTGCTGCGGCAAGCTATTTAGCAA
ATAAAATTGTCCATGGAAGTCAAGAAGATATTGATGCTTATCTGTCATATTTGAAAGCAGGAAATTCTGATTACCCATTA
GAAGTCATTGCCAAAGCAGGTGTTGATATGACTCAAGAAGACTACTTGGATCAAGCATTCGCTGTTTTTGAAGCACGATT
AACTGAATTAGAAGAATTAGTTGCTAAAGGCGCGCACAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.285

99.833

0.712

Multiple sequence alignment