Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN15_RS34865 Genome accession   NZ_CP107746
Coordinates   7886129..7886788 (-) Length   219 a.a.
NCBI ID   WP_327128235.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7881129..7891788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS34855 (OHN15_34915) - 7884395..7885570 (+) 1176 WP_406295868.1 hypothetical protein -
  OHN15_RS34860 (OHN15_34920) - 7885763..7886083 (-) 321 WP_327128234.1 nuclear transport factor 2 family protein -
  OHN15_RS34865 (OHN15_34925) vraR 7886129..7886788 (-) 660 WP_327128235.1 response regulator transcription factor Regulator
  OHN15_RS34870 (OHN15_34930) - 7886785..7887939 (-) 1155 WP_327128236.1 histidine kinase -
  OHN15_RS34875 (OHN15_34935) - 7888064..7888726 (+) 663 WP_406295871.1 response regulator -
  OHN15_RS34880 (OHN15_34940) - 7888969..7890180 (+) 1212 WP_406295873.1 amino acid decarboxylase -
  OHN15_RS34885 (OHN15_34945) - 7890333..7891112 (+) 780 WP_327129280.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23478.73 Da        Isoelectric Point: 5.1380

>NTDB_id=645362 OHN15_RS34865 WP_327128235.1 7886129..7886788(-) (vraR) [Streptomyces sp. NBC_00624]
MTIRVLLADDNEITRRGLTWIMDSSPDVEVCGEAVDGEEAVALAGELQPDVVLLDVRMPRLDGLESIGHLLNLPHPPRIL
MLTTFHEDESVRVALRAGAAGFLLKDTPPDDLLRAIRDVHGGHSALGPPVARRLVDGLADRASRTDPEEGSRVASLSPRE
HEVLRLLSRGLTNTDIASALGMTEGTVKGHVSSILAKLGADSRVKAARIAYRAGLDDQA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=645362 OHN15_RS34865 WP_327128235.1 7886129..7886788(-) (vraR) [Streptomyces sp. NBC_00624]
ATGACCATCCGGGTCCTGCTCGCCGACGACAACGAGATCACCCGCCGCGGGCTGACCTGGATCATGGACTCCAGCCCCGA
TGTCGAAGTGTGCGGCGAAGCCGTCGACGGCGAGGAGGCGGTGGCCCTGGCCGGGGAGCTCCAGCCGGACGTGGTCCTTC
TCGACGTCCGGATGCCGAGGCTCGACGGACTCGAGTCCATCGGACACCTGCTGAACCTCCCGCACCCACCGCGGATCCTC
ATGCTCACAACATTCCACGAGGACGAGTCGGTACGGGTCGCGCTACGCGCCGGGGCGGCCGGCTTCCTGCTCAAGGACAC
GCCGCCCGACGACCTGCTGCGCGCCATCCGCGACGTGCACGGCGGTCATTCCGCTCTCGGCCCGCCGGTGGCCCGCCGCC
TGGTGGACGGCCTGGCCGACCGCGCCTCGCGGACCGACCCCGAAGAGGGGAGCAGAGTCGCCTCCCTCAGCCCGCGTGAG
CACGAGGTGCTGCGGCTGCTCTCACGCGGGCTGACCAATACGGACATCGCCTCCGCGCTCGGCATGACCGAGGGCACGGT
CAAGGGCCACGTCAGCAGCATCCTCGCGAAGCTGGGTGCGGACAGCCGCGTCAAGGCCGCGCGGATCGCCTACCGCGCGG
GGCTCGACGACCAGGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.426

98.63

0.379