Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHN15_RS33875 Genome accession   NZ_CP107746
Coordinates   7641539..7642540 (-) Length   333 a.a.
NCBI ID   WP_406295686.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7636539..7647540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS33865 (OHN15_33920) - 7636992..7639328 (-) 2337 WP_406295684.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHN15_RS33870 (OHN15_33925) - 7639459..7641393 (-) 1935 WP_327128058.1 cellulase family glycosylhydrolase -
  OHN15_RS33875 (OHN15_33930) cytR 7641539..7642540 (-) 1002 WP_406295686.1 LacI family DNA-binding transcriptional regulator Regulator
  OHN15_RS33880 (OHN15_33935) - 7642705..7643532 (-) 828 WP_406295688.1 carbohydrate ABC transporter permease -
  OHN15_RS33885 (OHN15_33940) - 7643546..7644487 (-) 942 WP_406295690.1 carbohydrate ABC transporter permease -
  OHN15_RS33890 (OHN15_33945) - 7644520..7645809 (-) 1290 WP_406295692.1 ABC transporter substrate-binding protein -
  OHN15_RS33895 (OHN15_33950) - 7646281..7647192 (+) 912 WP_406295694.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34952.96 Da        Isoelectric Point: 6.3935

>NTDB_id=645360 OHN15_RS33875 WP_406295686.1 7641539..7642540(-) (cytR) [Streptomyces sp. NBC_00624]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMTQESALYERLVAEGRIDGAVLTDARADDPRPQLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
GAGVREAVAHLLELGHRRLAYIAGPADLVHTRLRLAAFEEALAEAGLRPVAVRHTEFTEEAAVAVTEELLALPDRPTALV
FPNDSMAVCGIGTAQRSGLRVPGEVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGEDVPPPVLDGRPRL
VVRESTGPVPSAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=645360 OHN15_RS33875 WP_406295686.1 7641539..7642540(-) (cytR) [Streptomyces sp. NBC_00624]
GTGGCCGCCGCGGCAGGGGTCTCCACCGCTGCGGTCTCCCAGGCTGTCAACGGCACGGGGCGGATCTCGGAGGCCACCCG
CCGCCGGGTCCTGGACGCGGCTGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCGACAGCCCTGCGCCGGGCACGGACCC
GGACGATCGCGCTCGTCGTGCGACGCCCCACGGACGTGCTCGGTGCCGACCCGCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCGCCCAGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGACCCAGGAGAGCGCGCTGTACGA
GCGGCTGGTCGCCGAAGGCCGGATCGACGGTGCCGTGCTGACCGACGCACGGGCGGACGATCCGCGCCCGCAGCTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGCGCACCGGATCCCGCGTCGCCGGTTCCCGGCGTCGGCCTCGGGCAGCAG
GGCGCCGGTGTCCGTGAGGCCGTCGCACACCTCCTGGAGCTCGGCCACCGGCGTCTCGCGTACATCGCGGGTCCGGCCGA
CCTGGTGCACACCAGGCTGCGTCTGGCCGCCTTCGAGGAAGCCCTCGCGGAGGCGGGTCTGCGGCCCGTCGCCGTCCGGC
ACACCGAGTTCACGGAGGAGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCTCTGCCCGACCGGCCGACCGCTCTGGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCCCAGCGCAGCGGGCTCCGGGTGCCCGGGGAGGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACCACCGTGGACCAGCAGGTGCAACGTGTCG
GTGCGGCGGCCGCCCGCACGCTGCTCGTCCGGTGCGGTGAAGACGTACCCCCGCCGGTCCTCGACGGACGTCCGCGCCTG
GTCGTACGGGAGTCGACCGGTCCCGTGCCGTCCGCGCCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.036

100

0.36