Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   L1A02_RS10130 Genome accession   NZ_CP090873
Coordinates   2011555..2012001 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2006555..2017001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A02_RS10095 (L1A02_10095) - 2007049..2007252 (+) 204 WP_000087561.1 YqgQ family protein -
  L1A02_RS10100 (L1A02_10100) - 2007249..2008235 (+) 987 WP_000161314.1 ROK family glucokinase -
  L1A02_RS10105 (L1A02_10105) - 2008235..2008564 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  L1A02_RS10110 (L1A02_10110) - 2008561..2009184 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  L1A02_RS10115 (L1A02_10115) comGA 2009236..2010210 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  L1A02_RS10120 (L1A02_10120) comGB 2010182..2011252 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  L1A02_RS10125 (L1A02_10125) comGC 2011266..2011577 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  L1A02_RS10130 (L1A02_10130) comGD 2011555..2012001 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  L1A02_RS10135 (L1A02_10135) comGE 2011988..2012287 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  L1A02_RS10140 (L1A02_10140) comGF 2012205..2012702 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  L1A02_RS10145 (L1A02_10145) - 2012799..2012945 (+) 147 WP_001792109.1 hypothetical protein -
  L1A02_RS10150 (L1A02_10150) - 2012935..2013459 (+) 525 WP_001015120.1 shikimate kinase -
  L1A02_RS10155 (L1A02_10155) gcvT 2013618..2014709 (+) 1092 WP_103153623.1 glycine cleavage system aminomethyltransferase GcvT -
  L1A02_RS10160 (L1A02_10160) gcvPA 2014729..2016075 (+) 1347 WP_234863239.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=645359 L1A02_RS10130 WP_001788899.1 2011555..2012001(+) (comGD) [Staphylococcus aureus strain SAUR_BFS16]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=645359 L1A02_RS10130 WP_001788899.1 2011555..2012001(+) (comGD) [Staphylococcus aureus strain SAUR_BFS16]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1