Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OHN15_RS33435 Genome accession   NZ_CP107746
Coordinates   7546685..7549108 (-) Length   807 a.a.
NCBI ID   WP_406295613.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7541685..7554108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS33415 (OHN15_33470) - 7542180..7543070 (-) 891 WP_327127983.1 LysR substrate-binding domain-containing protein -
  OHN15_RS33420 (OHN15_33475) - 7543166..7543873 (+) 708 WP_327127984.1 succinate dehydrogenase -
  OHN15_RS33425 (OHN15_33480) - 7543875..7545824 (+) 1950 WP_406295611.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  OHN15_RS33430 (OHN15_33485) - 7545821..7546567 (+) 747 WP_030933948.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  OHN15_RS33435 (OHN15_33490) uvrA 7546685..7549108 (-) 2424 WP_406295613.1 ABC transporter Machinery gene
  OHN15_RS33440 (OHN15_33495) - 7549279..7549767 (+) 489 WP_327127987.1 hypothetical protein -
  OHN15_RS33445 (OHN15_33500) - 7549828..7550043 (-) 216 WP_327127988.1 dodecin -
  OHN15_RS33450 (OHN15_33505) - 7550246..7551502 (+) 1257 WP_406295615.1 extracellular solute-binding protein -
  OHN15_RS33455 (OHN15_33510) - 7551697..7552584 (+) 888 WP_327127990.1 GNAT family N-acyltransferase -
  OHN15_RS33460 (OHN15_33515) - 7552581..7553429 (+) 849 WP_406295618.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 86124.65 Da        Isoelectric Point: 6.5560

>NTDB_id=645359 OHN15_RS33435 WP_406295613.1 7546685..7549108(-) (uvrA) [Streptomyces sp. NBC_00624]
MPTPHDRYVRVRGAREHNLQDVQVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPEVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPAGAERLDSDAFSPNTAAGACPECHGLGLIHRTTEEL
LVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDTLGYDIGRPWRELDANDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVMHTFADTKSRTLRAKAERFLTGVPCPVCGGSRLRPEAMAVTFAGRTIAELAALPLADLAEVLSAAGGDDTARV
LTADLLARIETVTELGLGYLGLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLAVLGRLKEAG
NSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPAGLADVLESATRRFLFDTGPVPVREPRTPSGWLRLIGVDRH
NVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGALADRQASTTADLPAERPVPGCASALGLEAVDRLVQVDQRPIGRT
PRSNLATYTGLFDVVRKLFTATDMARERGYRAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPQTL
EVTLRGLNIAQVLDLTVESAAGFFAGTPAAERSLRTLIDVGLGYLRLGQPATELSGGEAQRIKLATELQRTRRGHTLYLL
DEPTTGLHPADVEVLMRQLHGLVDGGSTVVVVEHDMAVVAAADWVIDLGPGGGDRGGRIVATGPPTDVAGAADSRTAPYL
SAALRPG

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=645359 OHN15_RS33435 WP_406295613.1 7546685..7549108(-) (uvrA) [Streptomyces sp. NBC_00624]
ATGCCCACCCCCCACGATCGGTACGTTCGGGTGCGCGGCGCCCGTGAGCACAATCTGCAGGACGTCCAGGTCGACATCCC
GCGCGACACCCTCACCGTCTTCACGGGCGTCTCCGGCTCAGGCAAGTCCTCGCTCGCCTTCGGGACGATCTACGCCGAGG
CTCAGCGCCGCTATTTCGAGTCCGTCGCCCCGTACGCCCGCCGGCTGATCCACCAGGTCGGCGCGCCCGAGGTCGGCGAG
ATCACCGGGCTGCCGCCCGCGGTCTCCCTGGAGCAGCGCCGGTCCGCGCCCGGCGCGCGGTCCTCCGTCGGCACGGTCAC
CACGCTGTCCAACTCGCTGCGGATGCTGTTCTCGCGTGCCGGGGAGTACCCTGCCGGCGCCGAGCGGCTGGACTCCGACG
CGTTCTCGCCGAACACCGCCGCCGGGGCCTGCCCCGAGTGTCACGGGCTGGGCCTGATCCACCGCACCACGGAGGAGCTG
CTCGTCCCCGACCCGTCGCTGTCGATCCGCGACGGTGCGATCGCGGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTGCG
CGATGTGCTGGACACGCTGGGGTACGACATCGGCCGGCCGTGGCGCGAGCTGGACGCGAACGACCGGGAATGGATCCTCT
TCACCGACGAGCAACCGGTGGTGACGGTCCATCCGGTACGTGACGCGGGCCGGATCCAGCGCCCCTACCAGGGCACGTAC
ATGAGTGCGCGGCGCTATGTGATGCACACCTTCGCCGACACCAAGAGCCGCACCCTGCGGGCCAAGGCCGAGCGCTTCCT
GACCGGTGTCCCCTGCCCGGTCTGCGGCGGCAGCCGGCTGCGCCCGGAGGCGATGGCCGTCACCTTTGCGGGCCGTACGA
TCGCCGAGCTGGCCGCACTTCCCCTCGCGGATCTCGCCGAGGTGCTGTCGGCCGCGGGCGGCGACGACACCGCGCGGGTG
CTGACGGCGGATCTGCTGGCCCGGATCGAGACGGTGACCGAGCTCGGTCTCGGCTATCTCGGCCTCGACCGTACGGCTCC
CACGCTGTCCTCCGGTGAGCTGCAGCGACTGCGCCTCGCCACCCAGCTGCGGTCGGGACTGTTCGGGGTCGTCTATGTGC
TGGACGAGCCGTCGGCCGGTCTGCACCCGGCGGACACCGAGTCGCTGCTCGCGGTCCTCGGGCGGCTGAAGGAGGCCGGG
AACTCGGTCTTCGTCGTGGAGCACCAGATGGATGTGGTGCGGCGGGCGGACTGGCTGGTCGATGTGGGGCCACTGGCAGG
CGAACACGGGGGCAGGGTGCTGCACAGCGGGCCCCCGGCCGGGCTCGCCGACGTACTGGAGTCGGCGACGCGACGGTTCC
TCTTCGACACGGGGCCGGTGCCGGTGCGGGAGCCGCGTACGCCCTCCGGGTGGCTGAGGCTGATCGGAGTCGACCGGCAC
AATGTGCGCGGGGTCGACGCCGCGTTCCCGCTCGGGGTGTTCACGGCGGTCACCGGTGTCTCCGGCTCGGGCAAATCGAC
CCTGGTCGGCCAGGTCCTCGCCGGGGCCCTGGCCGACCGGCAGGCATCCACCACCGCCGATCTCCCTGCCGAGCGGCCAG
TGCCGGGGTGCGCATCGGCGCTCGGGCTGGAGGCGGTGGACCGTCTCGTCCAGGTCGACCAGCGGCCGATCGGCCGTACG
CCGCGCTCCAACCTGGCCACGTACACCGGGCTTTTCGATGTCGTACGGAAGCTGTTCACCGCGACCGACATGGCGCGCGA
GCGCGGCTACCGGGCGGGGCGGTTCTCGTTCAATGTGGCGGGCGGGCGGTGCGAGACCTGTCAGGGCGAGGGGTTCGTCT
CCGTCGAGCTGCTCTTCCTGCCGAGTACGTATGCGCCCTGCCCGGACTGTCACGGGGCGCGGTACAACCCGCAGACGCTG
GAGGTGACTCTGCGCGGGCTGAACATTGCGCAGGTGCTGGACCTGACGGTGGAGTCGGCGGCCGGCTTCTTCGCGGGGAC
CCCCGCCGCGGAGCGCAGTCTGCGGACGCTGATCGATGTCGGGCTCGGCTATCTGCGGCTGGGGCAGCCGGCGACGGAGT
TGTCCGGTGGTGAGGCACAGCGGATCAAGCTGGCCACCGAGCTGCAGCGCACCCGTCGGGGTCACACCCTGTATCTGCTC
GACGAGCCGACCACGGGTCTGCATCCGGCCGATGTCGAGGTGCTGATGCGGCAGCTGCACGGGCTGGTCGACGGGGGCAG
CACGGTGGTGGTCGTGGAGCACGACATGGCGGTCGTCGCGGCCGCCGACTGGGTGATCGATCTCGGTCCGGGCGGCGGGG
ACCGGGGCGGCCGGATCGTCGCCACGGGACCGCCGACGGATGTGGCGGGTGCGGCGGACAGCCGGACGGCACCGTACCTG
TCGGCGGCGCTCCGACCGGGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(484-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.98

88.848

0.373
  uvrA Streptococcus pneumoniae TIGR4

41.98

88.848

0.373
  uvrA Streptococcus pneumoniae D39

41.98

88.848

0.373