Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHN15_RS30550 Genome accession   NZ_CP107746
Coordinates   6873597..6874688 (+) Length   363 a.a.
NCBI ID   WP_327127512.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6868597..6879688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS30535 (OHN15_30595) - 6870180..6871763 (+) 1584 WP_327127510.1 ABC transporter substrate-binding protein -
  OHN15_RS30540 (OHN15_30600) - 6871760..6872713 (+) 954 WP_030916611.1 ABC transporter permease -
  OHN15_RS30545 (OHN15_30605) - 6872710..6873600 (+) 891 WP_327127511.1 ABC transporter permease -
  OHN15_RS30550 (OHN15_30610) amiE 6873597..6874688 (+) 1092 WP_327127512.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS30555 (OHN15_30615) - 6874769..6875725 (+) 957 WP_051878032.1 ABC transporter ATP-binding protein -
  OHN15_RS30560 (OHN15_30620) - 6875796..6877637 (+) 1842 WP_406295177.1 gamma-glutamyltransferase family protein -
  OHN15_RS30565 (OHN15_30625) - 6877701..6878528 (+) 828 WP_406295179.1 inositol monophosphatase family protein -
  OHN15_RS30570 (OHN15_30630) - 6878598..6879023 (-) 426 WP_327127515.1 VOC family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38664.15 Da        Isoelectric Point: 6.0040

>NTDB_id=645357 OHN15_RS30550 WP_327127512.1 6873597..6874688(+) (amiE) [Streptomyces sp. NBC_00624]
MTETVLEPVREPVREPVLSVRDLSVSFRSDTRTVHAVDGVSYDLAPGEVLAVVGESGCGKSVTSMAVMGLLPPTAHIGGS
IRLGGRELVGAHEKELQKVRGKDIAMIFQEPMTSLNPVLTIGRQIGEVLRRHQGLSRKDARTRAVELLELVGIPAPQRRI
DEYPHQLSGGMRQRVMIAIAVACDPSVLIADEPTTALDVTVQAGILEVLQSLRERLGTAIVLVTHDLGVVADAADRVLVM
YAGRSVEQAPVHDLFGTARHPYTRGLLGAVLRPGGEGKRRLPEIPGLVPSLDSQPDACTFAPRCSRADDTCTGGRPGFKA
IDPKAGADALHRAACWHPYGADAATDTTPAADTTDTLDQEAGE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=645357 OHN15_RS30550 WP_327127512.1 6873597..6874688(+) (amiE) [Streptomyces sp. NBC_00624]
ATGACCGAGACCGTTCTCGAACCCGTACGGGAACCGGTGCGTGAGCCGGTCCTGAGCGTCCGCGACCTGTCGGTGTCGTT
CCGGTCCGACACCCGGACGGTGCACGCCGTCGACGGTGTCTCCTACGACCTCGCCCCCGGCGAAGTCCTCGCCGTGGTGG
GGGAGTCTGGGTGCGGCAAGTCCGTCACCTCCATGGCCGTGATGGGCCTGCTCCCGCCGACCGCGCACATCGGCGGTTCG
ATCAGGCTCGGCGGCCGGGAACTGGTCGGCGCCCACGAGAAGGAGCTCCAGAAGGTCCGCGGCAAGGACATCGCGATGAT
CTTCCAGGAGCCGATGACCTCGCTCAACCCCGTCCTCACCATCGGCCGGCAGATCGGCGAAGTGCTGCGCAGGCACCAGG
GGCTGAGCAGGAAGGACGCCAGGACGAGGGCCGTCGAACTCCTGGAACTGGTCGGCATCCCGGCCCCGCAGCGCCGTATC
GACGAGTACCCGCACCAGCTCTCCGGTGGCATGCGGCAGCGCGTGATGATCGCGATCGCCGTCGCCTGCGACCCGTCCGT
ACTCATCGCGGACGAGCCGACCACCGCACTCGACGTCACCGTGCAGGCCGGCATCCTCGAAGTCCTCCAGTCGCTGCGCG
AACGGCTCGGCACGGCGATCGTCCTGGTCACCCACGACCTCGGGGTGGTGGCGGACGCCGCCGACCGGGTGCTGGTGATG
TACGCCGGACGCTCCGTCGAACAGGCGCCGGTCCACGACCTGTTCGGCACCGCCCGGCATCCGTACACCCGAGGTCTGCT
CGGCGCCGTCCTGCGGCCCGGCGGCGAGGGCAAGCGGCGGCTGCCCGAGATCCCCGGCCTGGTGCCGAGCCTGGACAGCC
AGCCGGACGCCTGCACCTTCGCCCCGCGGTGCAGCCGCGCCGACGACACCTGCACCGGTGGCCGGCCCGGCTTCAAGGCC
ATCGACCCGAAGGCGGGCGCGGACGCCCTCCACCGGGCGGCCTGCTGGCACCCCTACGGCGCCGACGCCGCCACGGACAC
CACCCCCGCAGCCGACACGACCGACACACTCGACCAGGAGGCCGGAGAGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(246-311)

ABC transporter (ABC_tran)

(38-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.012

89.807

0.413
  oppD Streptococcus mutans UA159

45.82

88.981

0.408
  amiE Streptococcus thermophilus LMG 18311

45.538

89.532

0.408
  amiE Streptococcus thermophilus LMD-9

45.538

89.532

0.408