Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHN15_RS28205 Genome accession   NZ_CP107746
Coordinates   6322816..6323610 (-) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_00624     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6317816..6328610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS28190 (OHN15_28245) - 6317869..6318738 (+) 870 WP_406294821.1 GNAT family N-acetyltransferase -
  OHN15_RS28195 (OHN15_28250) - 6318799..6320658 (+) 1860 WP_406294823.1 IucA/IucC family protein -
  OHN15_RS28200 (OHN15_28255) - 6320709..6322679 (+) 1971 WP_030927138.1 ATP-dependent DNA helicase -
  OHN15_RS28205 (OHN15_28260) dinR/lexA 6322816..6323610 (-) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OHN15_RS28210 (OHN15_28265) nrdR 6324154..6324666 (+) 513 WP_406294825.1 transcriptional regulator NrdR -
  OHN15_RS28215 (OHN15_28270) - 6324827..6327730 (+) 2904 WP_371795171.1 vitamin B12-dependent ribonucleotide reductase -
  OHN15_RS28220 (OHN15_28275) - 6327939..6328475 (-) 537 WP_327127128.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=645349 OHN15_RS28205 WP_030927140.1 6322816..6323610(-) (dinR/lexA) [Streptomyces sp. NBC_00624]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=645349 OHN15_RS28205 WP_030927140.1 6322816..6323610(-) (dinR/lexA) [Streptomyces sp. NBC_00624]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCAGAGCCTGCGCGCCCAGCGCGCTCGCTCCCCGGTCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTACCCA
CCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACACAGCCGA
CCGACACGACCGGCAAGCCAGCCGCTTCGTACGTGCCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCTGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCAACCGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371