Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SPB_RS01240 Genome accession   NZ_AEUT02000001
Coordinates   240640..241509 (+) Length   289 a.a.
NCBI ID   WP_003104439.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 235640..246509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS01210 (SPB_0246) - 235905..236783 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  SPB_RS01215 (SPB_0247) atpD 236884..238290 (+) 1407 WP_003104762.1 F0F1 ATP synthase subunit beta -
  SPB_RS01220 (SPB_0248) - 238303..238719 (+) 417 WP_003103020.1 F0F1 ATP synthase subunit epsilon -
  SPB_RS01225 (SPB_0249) - 238845..239081 (+) 237 WP_003105566.1 DUF1146 family protein -
  SPB_RS01230 (SPB_0250) murA 239146..240417 (+) 1272 WP_003105265.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SPB_RS01235 (SPB_0251) - 240421..240609 (+) 189 WP_003104489.1 DNA-directed RNA polymerase subunit beta -
  SPB_RS01240 (SPB_0252) endA 240640..241509 (+) 870 WP_003104439.1 DNA/RNA non-specific endonuclease Machinery gene
  SPB_RS01245 (SPB_0253) pheS 241785..242828 (+) 1044 WP_003105357.1 phenylalanine--tRNA ligase subunit alpha -
  SPB_RS01250 (SPB_0254) - 242914..243438 (+) 525 WP_003105886.1 N-acetyltransferase -
  SPB_RS01255 (SPB_0255) pheT 243453..245858 (+) 2406 WP_003103886.1 phenylalanine--tRNA ligase subunit beta -
  SPB_RS01260 (SPB_0256) - 246038..246280 (+) 243 WP_003104897.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31919.62 Da        Isoelectric Point: 9.7755

>NTDB_id=64534 SPB_RS01240 WP_003104439.1 240640..241509(+) (endA) [Streptococcus parauberis NCFD 2020]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNDVISDNNPIKQIYQSVTGESDGKPFTKDNNNPDTPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=64534 SPB_RS01240 WP_003104439.1 240640..241509(+) (endA) [Streptococcus parauberis NCFD 2020]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACGATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGATAATAATAACCCTGATACGCCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAG
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.717

78.201

0.498
  endA Streptococcus pneumoniae D39

63.717

78.201

0.498
  endA Streptococcus pneumoniae R6

63.717

78.201

0.498
  endA Streptococcus pneumoniae TIGR4

63.717

78.201

0.498

Multiple sequence alignment