Detailed information NTG0645275

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: L0992_RS14810
• Genome accession: NZ_CP090854
• Coordinates: 3336898..3337902 (+)
• Length: 334 a.a.
• NCBI ID: WP_017630922.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain YSX02
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3331898..3342902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS14795 (L0992_14790)	-	3332270..3333559 (-)	1290	WP_048663011.1	malic enzyme-like NAD(P)-binding protein	-
L0992_RS14800 (L0992_14795)	rpmE	3333893..3334111 (-)	219	WP_004737142.1	50S ribosomal protein L31	-
L0992_RS14805 (L0992_14800)	priA	3334456..3336657 (+)	2202	WP_373949046.1	primosomal protein N'	-
L0992_RS14810 (L0992_14805)	cytR	3336898..3337902 (+)	1005	WP_017630922.1	DNA-binding transcriptional regulator CytR	Regulator
L0992_RS14815 (L0992_14810)	ftsN	3338025..3338564 (+)	540	WP_017630921.1	cell division protein FtsN	-
L0992_RS14820 (L0992_14815)	hslV	3338785..3339333 (+)	549	WP_017630920.1	ATP-dependent protease subunit HslV	-
L0992_RS14825 (L0992_14820)	hslU	3339391..3340731 (+)	1341	WP_176680542.1	HslU--HslV peptidase ATPase subunit	-
L0992_RS14830 (L0992_14825)	-	3340887..3341804 (+)	918	WP_239848292.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
L0992_RS14835 (L0992_14830)	rraA	3341878..3342393 (+)	516	WP_176680544.1	ribonuclease E activity regulator RraA	-
L0992_RS14840 (L0992_14835)	zapB	3342488..3342730 (-)	243	WP_008219652.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36525.09 Da
• Isoelectric Point: 6.4911

>NTDB_id=645275 L0992_RS14810 WP_017630922.1 3336898..3337902(+) (cytR) [Vibrio pomeroyi strain YSX02]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVAMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=645275 L0992_RS14810 WP_017630922.1 3336898..3337902(+) (cytR) [Vibrio pomeroyi strain YSX02]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACTGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGTAAGCGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCATATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTTCTATTGGGTGACAGCGGCCAGCAAAAGAAGCGTGAGTCTTCTTT
TGTTAACCTTGTCTTCACTAAACAAGCTGACGGCATGCTACTGCTTGGCACCGACCACCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAACTTACCGCCGATGGTAATGGCGTGTGAATTCGCTCCTGAGCTTGAACTCCCAACGGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCCGTGAATTACCTAGCTCAGTTAGGCCATAAGCGTATCGCTCAAATCTCAGGTCCTGTATC
AGCAACTCTATGTAAGTTCCGACAACAAGGTTACCAACAAGCTCTGCGTCGTGCAGGTGTGGCAATGAACCCAGCCTACA
GCACAGTCGGCGACTTCACTTTTGAAGCGGGTGCTCAAGCGGTTCGTCAGTTACTGGCGCTGCCTGAACAACCAACCGCT
ATCTTCTGTCACAACGATGCGATGGCCATTGGTGCAATTCAAGAAGCGAAGAAGTTAGGTTTACGAGTTCCTCAAGACTT
ATCAATTGTTGGTTTCGATGACATTCAATTCGCTCAATACTGCGATCCACCGCTAACCACCATTTCTCAACCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTACTGAAAGGCAACGATGTGCAAGCAGGTTCTCGTCTGCTAGAA
GCCAAATTAGTAGTTCGTGGCAGTACTGCGCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.759	99.401	0.892
cytR	Vibrio parahaemolyticus RIMD 2210633	87.387	99.701	0.871