Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L0992_RS13360 Genome accession   NZ_CP090854
Coordinates   3071140..3071658 (-) Length   172 a.a.
NCBI ID   WP_373948819.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3066140..3076658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS13340 (L0992_13340) rpsP 3066715..3066963 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  L0992_RS13345 (L0992_13345) ffh 3067175..3068569 (-) 1395 WP_010435884.1 signal recognition particle protein -
  L0992_RS13350 (L0992_13350) - 3068770..3069564 (+) 795 WP_373948816.1 inner membrane protein YpjD -
  L0992_RS13355 (L0992_13355) - 3069692..3070963 (+) 1272 WP_017629424.1 HlyC/CorC family transporter -
  L0992_RS13360 (L0992_13360) luxS 3071140..3071658 (-) 519 WP_373948819.1 S-ribosylhomocysteine lyase Regulator
  L0992_RS13365 (L0992_13365) - 3071683..3072333 (-) 651 WP_176680433.1 hypothetical protein -
  L0992_RS13370 (L0992_13370) gshA 3072344..3073912 (-) 1569 WP_239848429.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18934.69 Da        Isoelectric Point: 4.5912

>NTDB_id=645262 L0992_RS13360 WP_373948819.1 3071140..3071658(-) (luxS) [Vibrio pomeroyi strain YSX02]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGAPTEQQVADGWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=645262 L0992_RS13360 WP_373948819.1 3071140..3071658(-) (luxS) [Vibrio pomeroyi strain YSX02]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTCACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTTGAGCATCTATACGCTGGTTTCATGCGTAATCAGCTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTGCTCCTACAGAGCAACAAGTCGCTGACGGTTGGTTAGCTGC
GATGAAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCAATCATCGCTGCAGGCATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89