Detailed information NTG0645257

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: L0992_RS13090
• Genome accession: NZ_CP090854
• Coordinates: 3000947..3004336 (+)
• Length: 1129 a.a.
• NCBI ID: WP_017633264.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain YSX02
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2995947..3009336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS13065 (L0992_13070)	erpA	2996235..2996576 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
L0992_RS13070 (L0992_13075)	hemL	2996873..2998168 (+)	1296	WP_373948738.1	glutamate-1-semialdehyde 2,1-aminomutase	-
L0992_RS13075	-	2998310..2998435 (-)	126	WP_048658168.1	hypothetical protein	-
L0992_RS13080 (L0992_13080)	-	2998512..2999597 (+)	1086	WP_017633266.1	AI-2E family transporter	-
L0992_RS13085 (L0992_13085)	rsmC	2999708..3000730 (+)	1023	WP_373948747.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
L0992_RS13090 (L0992_13090)	chiS	3000947..3004336 (+)	3390	WP_017633264.1	response regulator	Regulator
L0992_RS13095 (L0992_13095)	-	3005047..3006729 (+)	1683	WP_017633263.1	ABC transporter substrate-binding protein	-
L0992_RS13100 (L0992_13100)	-	3006899..3007885 (+)	987	WP_076655098.1	ABC transporter permease	-
L0992_RS13105 (L0992_13105)	-	3007888..3008913 (+)	1026	WP_239828623.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127143.80 Da
• Isoelectric Point: 5.3160

>NTDB_id=645257 L0992_RS13090 WP_017633264.1 3000947..3004336(+) (chiS) [Vibrio pomeroyi strain YSX02]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSYIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGSDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATEEELKNYNESGSYSHFQAPDLIDNAQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCESLRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=645257 L0992_RS13090 WP_017633264.1 3000947..3004336(+) (chiS) [Vibrio pomeroyi strain YSX02]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACCTCACACCTTGTTT
CAGTCCGTGATACTAAGCAACAGCAAATTGTCGATTACCTGCAAGCTCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCA
GAATTAGCCAATGCCAGTGGCGGTCGATTCTATGGTTTGATCAATGCCTTCCAGCGACTTGGTCTAGATATTGACGAAGC
ACGCAGTAATGCGCAGCAACGCTACATTCAAGGATCGGGCGATCAAATCAAAACATCGATTCTTCCTGAGTCGAGTAGCT
ACATTGGCAGTGAGCGTTATCGCCTACTGCACAAGCGCTACCATAACGCTTACCTAGAGCTGCTTAAACGCTCCGATTTT
GACGATATTCTATTGGTTGATATCAACGGTAACGTTGCTTACTCCGTCTTTAAAAATGACGATTACGGCACTAACTTACT
AACTGGTAAGTACAAAGACTCAAACCTAGGTGTTACCTTTCAACGACTAGCTAAAGATGTCACCGACCGACGTAAATCCA
ATGAAGATTACACACCAGTTATTGTGTCGGACTTTAAAGACGAGAACGGTAAACAGACGGCATGGCTAGGTGCACCTATC
GTACAGCAGGGCTATCTGCACAGTTATGCGATGTTCAGACTGCCGATCAATGGCATCACCAAACTGATTGCCGATCTAAA
CAAGAGCTCTAACATTCAAACGCTTCTTGTAGGTAGTGACCACTTACCTCGTAGCCTTGCGCACTCTCAAGAGTCGATTA
ACTTAAGCCTAGACGTGGTTGATAAAGCACTTGCGGGCGAAACAGCCGTAGGCACATTTGATAACACTCTAGATCAGGCG
ATTATCGCGGCCTATACACCAATTGAACTCAAGTATGCGACTTGGGCTCTCGTTGTCGAGCTTCCAGAAAAAGAAGCATT
TGCCCGTATTCATCAGTTAGAAAAAATCTTCGTGATCGTGATGCTAACGGCGATCATTCTGGTGGTTGTCGCATCGCATT
ACCTCTCTAACTTCATCACCTCACCGCTGCTTAAATTGACATGGGCAGCCGAAAAAGTATCAGCCGGAGATCTGGATGAG
ACGATGATCAATACCGAGCGTAAAGATGAAATCGGTCGCTTGGCAGTCAGCTTTGAACGAATGCAGCGCTCTATTCGTGA
AAAGATGCAACTCATCAAAAGCCAAAATGATGAACTTGAAGACAACCTCAAAACAATCCAGAAGCAAAACGAAGAGTTAC
AGCTGGCTAACAAACTCAAAGATGAGTTCTTAGCGACCACCTCTCATGAATTGAGAACTCCACTGCATGGCATGGTTGGT
ATTGCAGAAGCACTGATATCCGGCGCGAATGGTCCTATTCCGGCTAACCAGAAGTACCAGTTAGATATCATCATCAATAG
TGGTCAGCGATTAGCTACGCTGGTTGATGACTTGCTTGATTACCACAAGATGCGTTACGGCAGCTTAGATATTAAGAAAT
CTGCGGTTGATCTGTCAGCTGCCACCAGCTTGGTGCTTGAGTTATCTCATCACCTGCTAGGTAACAAACCAATCCGTATT
ATTAACCAAGTCCCAAGCGATCTAGGGCTGGTCTCATCCGATCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTCGG
TAATGCCATCAAGTACACATCCGAAGGTAAGATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGCGTGCAAGTGG
TCGATACAGGCCAAGGCATCCCAGCAGAGTACCTTGAGCACATCTTTGAACCGCTGATTCAAGCAGGACAAGATGCGAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTATCAATCAGTCGCCAGCTAATCGAGCTAATGGGAGGCTCGCTGTACGTAAG
TAGCCAACCGATGCTTGGTACCACATTCAGCTTTACTCTGCCTTTGGCTACAGAAGAAGAGCTAAAGAACTACAACGAAT
CAGGCAGCTACTCGCACTTCCAAGCACCTGATTTGATTGATAACGCCCAGCAAGAGAACAGTGTAATCAGTGAGAACCCT
GACGGTCCACTCTTAGTTATCGCTGATGACGAACCCGTGAACCTGCGAGTATTGGACAGCTTCTTGAAATTAGAAGGCTA
CCGAGTACGCACAGCCTGTGATGGCCCTGAAACCATTGAATTGATTGAGAAAGAGAAGCCAGAACTGCTTCTACTCGACA
TCATGATGCCGGGCATGAGTGGCTATCAAGTGTGTGAATCGCTGCGTAAGCAATATGACCACGCACAGTTGCCAATCATC
ATGCTGACGGCACTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCGGGTGCCAATGATTATTTATCTAAGCCGTT
CAACAAACAGGAACTGGCTGCGCGAATCACGGCTCACTTATCAGCAAGTAAAGCCGAACAAAGACGCCTTGAGAATGACC
AACTGCAACTTGAGCTCAAACACAGAGCCATGGTTGAAGCTAACCTGCTAGAAACTCAAGGACGTTTGCTAGAACAGTTA
GAGTCGGCTCCAGAAGCCATCATCTGTATTCGTGATGATCAGCGTATTCGCTTTGCCAATGAAGCGGCAGCGAAGCTATT
TAGACGTGGGCAAGAACAACTTAAGCGCTCCATGGCCGATGAGATCATCGCACCTAAGTACCTTAAGGTGGAACAGGCGC
ACTATTGTGGTGATATCGACATCTATATTGACGACACCCGTCAGCGCATACCAAGTGACATCCTTAAGCTGCCAGAAGGT
TCTGGGCTCGACACCATGTACATCTTCAATGTTGGTGGTGGCGTTAACTCAAACCGTATCAATAACCTTGAGACGGCCGT
TGAAGCGCTTTCTAGCTATGCCTTTGAAGGTGACAAGGATAAGCTGCAACAACTCAAAGAGCTAGGTGGTGAGTTTACGC
GTCTTGCTGATAAGGCAACCGGCGAAGGTAAAAACAAACAAGAGTTGATGCGTGAAGTCCTAGTGGATGCCATGACCAAC
GCCATTATCTACTGGGAATCTGTTACCGGTGAGACCAAGTTTGCTTTCGCAGAAAAGAGTGGCTTGTGGCGAGTCTACTT
AGACCGTAGTACCCTGCAAACTAGAACGCTAGACAAATACCTACGCGTAGAAACTCTACCGAAAACACCTCGCTGGCGAA
CGGTACTGAGCTCTATCGAATTCATTCTTGAGCACTGTAAAGAACAAACACCAGAAAGAACTCATATCGAGATGCTAAGA
GATAAACTGCAGAAACTACTGACCAGCTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS domain (PAS_8) (880-914)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.769