Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L0992_RS11050 Genome accession   NZ_CP090854
Coordinates   2538853..2540241 (-) Length   462 a.a.
NCBI ID   WP_017632950.1    Uniprot ID   A0A4R2FNJ9
Organism   Vibrio pomeroyi strain YSX02     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2533853..2545241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS11015 (L0992_11020) moaE 2534118..2534573 (-) 456 WP_146492239.1 molybdopterin synthase catalytic subunit MoaE -
  L0992_RS11020 (L0992_11025) moaD 2534576..2534821 (-) 246 WP_017632501.1 molybdopterin synthase sulfur carrier subunit -
  L0992_RS11025 (L0992_11030) moaC 2534818..2535297 (-) 480 WP_017093480.1 cyclic pyranopterin monophosphate synthase MoaC -
  L0992_RS11030 (L0992_11035) moaB 2535310..2535822 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  L0992_RS11035 (L0992_11040) moaA 2536179..2537168 (-) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  L0992_RS11040 (L0992_11045) - 2537504..2538391 (+) 888 WP_373948245.1 YvcK family protein -
  L0992_RS11045 (L0992_11050) luxU 2538485..2538829 (-) 345 WP_373948247.1 quorum-sensing phosphorelay protein LuxU -
  L0992_RS11050 (L0992_11055) luxO 2538853..2540241 (-) 1389 WP_017632950.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  L0992_RS11055 (L0992_11060) uvrB 2540554..2542584 (-) 2031 WP_373948250.1 excinuclease ABC subunit UvrB -
  L0992_RS11065 (L0992_11070) rsxA 2543536..2544114 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  L0992_RS11070 (L0992_11075) rsxB 2544117..2544710 (+) 594 WP_373948252.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51735.28 Da        Isoelectric Point: 6.4047

>NTDB_id=645256 L0992_RS11050 WP_017632950.1 2538853..2540241(-) (luxO) [Vibrio pomeroyi strain YSX02]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=645256 L0992_RS11050 WP_017632950.1 2538853..2540241(-) (luxO) [Vibrio pomeroyi strain YSX02]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCAGTCGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATTTTATTAGATCTACGTCTACCTGATATGACGGGTATGGACGTGCTCTTTGCTGTAAAACAAAAATAT
CCTGAAGTACCCGTTATCTTCATGACAGCGCACGGTTCTATCGATACCGCAGTAGAAGCGATGCGTCATGGTTCTCAGGA
CTTCCTTATCAAGCCTTGTGAAGCCGACCGACTTCGTATTACGGTGAACAATGCGATCCGCAAAGCGACCAAGCTTAAGA
ACAGCTCTGAACATCCGGGAAACCAGAATTACCAAGGCTTCATTGGCAGTAGCCAAACCATGCAACAGGTTTATCGAACT
ATCGATTCCGCCGCATCGAGTAAAGCGAGCATTTTCATTACCGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGCGATAAGCCTTTTATCGCAATCAACTGTGCGGCAATTCCTAAAGACTTGATTGAAA
GTGAGCTGTTTGGTCACGTCAAAGGGGCGTTTACGGGCGCGGCAACAGACCGTCAAGGTGCTGCTGAACTGGCTGATGGA
GGCACACTGTTCCTCGATGAGCTGTGTGAAATGGATCTTGAACTGCAAACCAAGCTTCTGCGTTTTATCCAAACTGGTAC
TTTTCAAAAGGTAGGCTCTTCGAAGATGAAGAGTGTCGACGTGCGCTTTGTTTGTGCGACCAACCGTGACCCTTGGAAAG
AAGTACAGGAAGGTCGCTTTAGAGAAGACTTATACTACCGTCTGTACGTGATTCCTCTGCATTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTCATCGAGATTGCATACTCATTATTGGGCTACATGTCGGTTGAAGAAGGCAAGGCGTTTGTACGTTT
TGCTCAAGAAGTGCTGGATCGCTTTAACCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTGCGGAATG
TGGTGGTGTTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCACCATTGAATCAACCGATTGAAAACAGTCTG
CGCCTGAAAGAGAAGCAGAGTGAAGACATCACCGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAAGCCATAAAAGCGTGTGATGGCAACATCCCTCGTGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATATACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2FNJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838