Detailed information NTG0645252

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: L0992_RS07265
• Genome accession: NZ_CP090854
• Coordinates: 1611024..1612448 (-)
• Length: 474 a.a.
• NCBI ID: WP_373950995.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain YSX02
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1606024..1617448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS07240 (L0992_07240)	-	1606639..1607292 (+)	654	WP_373950984.1	thiopurine S-methyltransferase	-
L0992_RS07245 (L0992_07245)	purT	1607431..1608606 (-)	1176	WP_373950987.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
L0992_RS07250 (L0992_07250)	cdd	1608774..1609661 (-)	888	WP_373950990.1	cytidine deaminase	-
L0992_RS07255 (L0992_07255)	-	1609948..1610625 (-)	678	WP_017629975.1	LrgB family protein	-
L0992_RS07260 (L0992_07260)	-	1610628..1610999 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
L0992_RS07265 (L0992_07265)	sbcB	1611024..1612448 (-)	1425	WP_373950995.1	exodeoxyribonuclease I	Machinery gene
L0992_RS07270 (L0992_07270)	-	1613349..1613783 (+)	435	WP_055318636.1	DUF4402 domain-containing protein	-
L0992_RS07275 (L0992_07275)	-	1613836..1614273 (+)	438	WP_373950999.1	DUF4402 domain-containing protein	-
L0992_RS07280 (L0992_07280)	-	1614270..1614980 (+)	711	WP_373951002.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54809.12 Da
• Isoelectric Point: 4.8224

>NTDB_id=645252 L0992_RS07265 WP_373950995.1 1611024..1612448(-) (sbcB) [Vibrio pomeroyi strain YSX02]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELIDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRDRLYTKRSELNEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHENESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=645252 L0992_RS07265 WP_373950995.1 1611024..1612448(-) (sbcB) [Vibrio pomeroyi strain YSX02]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCGAAAGATCGTCCGAG
TCAATTCGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTTCCTGCACCTGAAGCTGCGCTAATCACTCGCATCACACCACAAAAAGCCATGTCGCAAGGCCTGCCTGAGCCT
GAGTTTATCGCCAAGATTCACGCAGAGCTAGCAAAGCCAAACACCACAAGCCTTGGCTACAACAGCATTCGATTCGATGA
CGAAGTAACGCGATACACTTGTTATCGCAACTTCATTGACCCGTACGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACACGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
GACTATCGAATTAGCGAAAAAGCTGAAAGCTGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAACGCA
AGTTGAACGAATTAATCGACATCGTAAACATGACACCTCTAATGCACGTGTCAGGCATGTTTGGTCGTGATTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCTTGGCACCCAACCAACCAAAACGCCGTTATCGTGGTGGACTTAGCGAAAGATCCTAG
CCCACTGCTTGAGCTAGATACCGACGAGCTAAGGGACAGGCTCTACACCAAACGAAGCGAGCTAAATGAAGATGAGTTGC
CAGTGCCAATTAAGCTGGTACAACTCAACAAGTGCCCTATTCTCGCACCAGCAAAAACACTCACGGCTGAAAACGCGGAA
ACGATCGGTATCGACCGTCAGCAGTGCTTAAAGAACCTTGCACTATTACGTGAACACCCAGAGATTCGTGAAAAGCTGAT
TGGCTTGTACTCGCAAGAGCGTGAATACGAAAAAAGTGATGATGTAGATACACACCTTTACGACGGTTTCTTCTCTCCGG
CAGATAAGACCGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCCGCTTTGGACATCACTTTCAGTGACGAG
CGTATTAAGCCGCTGTTGTTCCGTTACCGCGCTCGTCATTTCCCATGGACACTTGATGAAGCTGAGCAACTGAAATGGGC
GAACCATTGTCGTGAGTTTTACGAGAGTCGCTTAGAAGAGTACATGCTGAATCTAGAAAACCTCGCACATGAAAACGAAA
GTGACGAGAAGAAAATGGCGATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766