Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   L0992_RS07190 Genome accession   NZ_CP090854
Coordinates   1595737..1596918 (-) Length   393 a.a.
NCBI ID   WP_373950962.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590737..1601918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS07180 (L0992_07180) - 1591479..1593245 (+) 1767 WP_373950955.1 ABC-F family ATP-binding cassette domain-containing protein -
  L0992_RS07185 (L0992_07185) - 1593537..1595585 (+) 2049 WP_373950958.1 hybrid sensor histidine kinase/response regulator -
  L0992_RS07190 (L0992_07190) cqsA 1595737..1596918 (-) 1182 WP_373950962.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  L0992_RS07195 (L0992_07195) - 1597177..1598565 (-) 1389 WP_373950965.1 PLP-dependent aminotransferase family protein -
  L0992_RS07200 (L0992_07200) - 1598669..1599583 (+) 915 WP_373950968.1 EamA family transporter -
  L0992_RS07205 (L0992_07205) - 1599847..1600719 (+) 873 WP_373950971.1 aspartoacylase -
  L0992_RS07210 (L0992_07210) - 1600816..1601823 (-) 1008 WP_373950974.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43686.64 Da        Isoelectric Point: 6.1070

>NTDB_id=645251 L0992_RS07190 WP_373950962.1 1595737..1596918(-) (cqsA) [Vibrio pomeroyi strain YSX02]
MSDKTKNKPLPSFIEERLSFYIQDLIAQNQSQKHLVLGKRPSPDSVVMQSNDYLSLSHNKAIQQAHQAAISDHDDNVVMS
AIFLQDTESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGASAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVIVDESHSLGTHGEKGAGLVQALGLTDQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKREALFKRAQSLITGLKRIGFNIRSESQ
IVSLDCGNERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=645251 L0992_RS07190 WP_373950962.1 1595737..1596918(-) (cqsA) [Vibrio pomeroyi strain YSX02]
ATGAGTGATAAAACCAAAAACAAACCATTACCTTCCTTTATTGAAGAACGCTTGAGCTTCTATATTCAAGACCTAATTGC
CCAAAACCAAAGCCAAAAACACTTAGTGTTGGGTAAACGTCCATCGCCCGACTCCGTTGTCATGCAAAGCAATGATTATT
TGTCTTTGTCACACAACAAAGCAATCCAACAAGCCCACCAAGCGGCGATCAGCGACCACGACGACAATGTCGTGATGTCT
GCGATTTTCTTACAAGATACGGAATCTAAACCAGCGTTTGAAACCGAACTCGCGAACTATGTTGGAATGGAAAGCTGCTT
ACTTTCCCAGTCTGGTTGGGCGGCAAATATTGGGTTGCTTCAAACGATCTGCCCGCCAAATACCCCTGTGTATATCGACT
TCTTTGCGCACATGTCGCTATGGGAAGGCATTCGCGCGGCCGGTGCGTCAGCTCATCCATTTATGCACAACAATATGAGT
CACTTACGTAAGCAACTGGAACGTCATGGTTCTGGTGTGATTGTTGTCGACTCGGTTTACAGCACCATAGGTACCATTGC
CCCGCTCCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCTGTTATCGTCGATGAATCGCATTCATTAGGAACAC
ACGGTGAAAAAGGTGCAGGCTTGGTGCAAGCACTCGGGCTCACTGATCAAGTCGATTTTATCACCGTCAGCTTAGCCAAA
ACCTTCGCTTATCGTGCAGGCGCGATTCTTGGACCTAAACAGCTATCCGATACTTTGCCGTTTGTTGCTTATCCTGCCAT
TTTTAGCTCAACCGTATTGCCGCAAGAAGTGATTCGTTTAGAGAAAACACTGGAGGTGATTAAAGGTGCAGATGACAAAC
GAGAAGCCCTGTTTAAGCGAGCACAGTCGCTTATTACGGGTCTAAAACGTATCGGCTTTAACATCCGTAGTGAATCTCAA
ATCGTCTCGCTAGATTGCGGTAATGAAAGAAATACAGAGCGAGTGCGCGATTTCCTTGAAGAGCGAGATGTGTTCGGCGC
AGTGTTCTGCCGTCCTGCTACGGGTAGGAATAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACTCCACGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAGGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55