Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L0994_RS08400 Genome accession   NZ_CP090847
Coordinates   1863444..1864868 (+) Length   474 a.a.
NCBI ID   WP_010441226.1    Uniprot ID   A0AAN0LJ83
Organism   Vibrio cyclitrophicus strain WXL032     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858444..1869868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS08385 (L0994_08350) - 1860841..1861551 (-) 711 WP_010441221.1 molecular chaperone -
  L0994_RS08390 (L0994_08355) - 1861548..1861985 (-) 438 WP_016786202.1 DUF4402 domain-containing protein -
  L0994_RS08395 (L0994_08360) - 1862039..1862473 (-) 435 WP_010441224.1 DUF4402 domain-containing protein -
  L0994_RS08400 (L0994_08365) sbcB 1863444..1864868 (+) 1425 WP_010441226.1 exodeoxyribonuclease I Machinery gene
  L0994_RS08405 (L0994_08370) - 1864894..1865265 (+) 372 WP_010441228.1 CidA/LrgA family protein -
  L0994_RS08410 (L0994_08375) - 1865268..1865945 (+) 678 WP_010441230.1 LrgB family protein -
  L0994_RS08415 (L0994_08380) cdd 1866316..1867203 (+) 888 WP_010441232.1 cytidine deaminase -
  L0994_RS08420 (L0994_08385) purT 1867370..1868545 (+) 1176 WP_010441234.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  L0994_RS08425 (L0994_08390) - 1868677..1869330 (-) 654 WP_010441236.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54631.96 Da        Isoelectric Point: 4.9171

>NTDB_id=645222 L0994_RS08400 WP_010441226.1 1863444..1864868(+) (sbcB) [Vibrio cyclitrophicus strain WXL032]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=645222 L0994_RS08400 WP_010441226.1 1863444..1864868(+) (sbcB) [Vibrio cyclitrophicus strain WXL032]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCTGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAACTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.533

99.789

0.764