Detailed information NTG0645207

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: L0994_RS02400
• Genome accession: NZ_CP090847
• Coordinates: 479364..480344 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain WXL032
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 474364..485344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0994_RS02370 (L0994_02360)	ispD	474599..475300 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
L0994_RS02375 (L0994_02365)	ispF	475303..475782 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
L0994_RS02380 (L0994_02370)	truD	475805..476851 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
L0994_RS02385 (L0994_02375)	surE	476927..477670 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
L0994_RS02390 (L0994_02380)	-	477671..478297 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
L0994_RS02395 (L0994_02385)	nlpD	478333..479265 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
L0994_RS02400 (L0994_02390)	rpoS	479364..480344 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
L0994_RS02405 (L0994_02395)	mutS	480454..483015 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
L0994_RS02410 (L0994_02400)	pncC	483139..483633 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
L0994_RS02415 (L0994_02405)	recA	483773..484813 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=645207 L0994_RS02400 WP_010435803.1 479364..480344(+) (rpoS) [Vibrio cyclitrophicus strain WXL032]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=645207 L0994_RS02400 WP_010435803.1 479364..480344(+) (rpoS) [Vibrio cyclitrophicus strain WXL032]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834