Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L0994_RS01215 Genome accession   NZ_CP090847
Coordinates   268942..269460 (+) Length   172 a.a.
NCBI ID   WP_016787693.1    Uniprot ID   A0AAN0LPQ8
Organism   Vibrio cyclitrophicus strain WXL032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263942..274460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS01195 (L0994_01190) - 264000..266558 (-) 2559 WP_010435294.1 penicillin-binding protein 1A -
  L0994_RS01200 (L0994_01195) pilM 266710..267735 (+) 1026 WP_016787692.1 type IV pilus assembly protein PilM Machinery gene
  L0994_RS01205 (L0994_01200) pilN 267719..268333 (+) 615 WP_010435288.1 PilN domain-containing protein Machinery gene
  L0994_RS01210 (L0994_01205) pilO 268326..268955 (+) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0994_RS01215 (L0994_01210) pilP 268942..269460 (+) 519 WP_016787693.1 pilus assembly protein PilP Machinery gene
  L0994_RS01220 (L0994_01215) pilQ 269520..271211 (+) 1692 WP_016787694.1 type IV pilus secretin PilQ Machinery gene
  L0994_RS01225 (L0994_01220) aroK 271388..271906 (+) 519 WP_009848907.1 shikimate kinase AroK -
  L0994_RS01230 (L0994_01225) aroB 271931..273019 (+) 1089 WP_010435273.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19191.31 Da        Isoelectric Point: 10.3202

>NTDB_id=645201 L0994_RS01215 WP_016787693.1 268942..269460(+) (pilP) [Vibrio cyclitrophicus strain WXL032]
MKPSNALYSILLLLLLSGCKANEDSLEDFVVQVEAKARKEVEQLVPASEFAAATYQRRAFRPPFELPQEAIVQNQPLVKK
NCWQPSTRARNGKLEKYPLNQLRLKGVMGSDSSVFGLVQTPIGNVVNVKKGQFIGLNNGRVTKVTSQYVLINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=645201 L0994_RS01215 WP_016787693.1 268942..269460(+) (pilP) [Vibrio cyclitrophicus strain WXL032]
ATGAAACCCAGTAACGCGCTTTATTCGATCTTGTTATTACTTTTATTGTCGGGCTGCAAAGCAAATGAGGATTCGTTAGA
AGACTTTGTTGTGCAAGTTGAGGCCAAGGCAAGGAAAGAGGTGGAACAGCTTGTTCCTGCCTCTGAGTTTGCTGCTGCCA
CTTATCAACGCCGAGCTTTTCGTCCTCCTTTTGAACTTCCTCAGGAAGCTATTGTGCAGAATCAACCTCTGGTTAAAAAA
AACTGTTGGCAGCCCAGTACTCGTGCTCGTAATGGAAAATTAGAAAAGTACCCGCTAAATCAGTTGCGTTTAAAAGGTGT
AATGGGAAGTGACTCAAGTGTATTTGGCCTTGTACAGACGCCTATAGGTAACGTTGTGAATGTTAAGAAAGGTCAGTTCA
TCGGCTTAAACAATGGTCGAGTTACCAAGGTAACAAGCCAGTACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCACAAGCGCAACGTTAGGCTGGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

63.19

94.767

0.599
  pilP Vibrio campbellii strain DS40M4

55.689

97.093

0.541