Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   L0993_RS07800 Genome accession   NZ_CP090845
Coordinates   1780409..1781590 (+) Length   393 a.a.
NCBI ID   WP_150878493.1    Uniprot ID   -
Organism   Vibrio kanaloae strain WXL161     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775409..1786590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0993_RS07780 (L0993_07755) purT 1776150..1777325 (+) 1176 WP_046224075.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  L0993_RS07785 (L0993_07760) - 1777443..1778096 (-) 654 WP_077680485.1 thiopurine S-methyltransferase -
  L0993_RS07790 (L0993_07765) - 1778421..1779197 (+) 777 WP_077680486.1 RelA/SpoT domain-containing protein -
  L0993_RS07795 (L0993_07770) ihfA 1779309..1779605 (-) 297 WP_004734853.1 integration host factor subunit alpha -
  L0993_RS07800 (L0993_07775) cqsA 1780409..1781590 (+) 1182 WP_150878493.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  L0993_RS07805 (L0993_07780) - 1781734..1783782 (-) 2049 WP_046224072.1 response regulator -
  L0993_RS07810 (L0993_07785) - 1784208..1785092 (-) 885 WP_060467838.1 Vmh family MBL fold metallo-hydrolase -
  L0993_RS07815 (L0993_07790) - 1785256..1786149 (+) 894 WP_060467839.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44039.25 Da        Isoelectric Point: 6.9964

>NTDB_id=645164 L0993_RS07800 WP_150878493.1 1780409..1781590(+) (cqsA) [Vibrio kanaloae strain WXL161]
MSNKFENKPLPSFIEERLNFYVQDLITPNKNQRHLVLGKRPKSNAVVMQSNDYLSLSHNVNIQKAHRDAISKHDDNVVMS
AIFLQDEQSKPAFETELAAYVGMETCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAYPFMHNNMN
HLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGKNGAGLVQSLGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKNSDDKRDTLFKRVKTLTTGLKQIGFNIRSESQ
IVALECGSERNTEHVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTSQDIDHVLRVCDEAFHHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=645164 L0993_RS07800 WP_150878493.1 1780409..1781590(+) (cqsA) [Vibrio kanaloae strain WXL161]
ATGAGTAATAAATTTGAAAATAAACCATTACCTTCCTTTATCGAAGAACGCTTGAACTTTTATGTTCAAGACCTCATTAC
CCCAAACAAAAACCAAAGGCACTTGGTATTAGGGAAACGCCCCAAGTCGAACGCCGTGGTTATGCAGAGTAATGACTACC
TATCACTATCGCATAACGTGAACATCCAAAAAGCACATAGGGATGCGATCTCAAAGCACGATGATAATGTAGTGATGTCT
GCCATATTTTTGCAAGATGAACAATCTAAGCCAGCGTTTGAAACCGAACTCGCAGCCTATGTCGGGATGGAAACCTGTTT
GCTGTCCCAATCTGGTTGGGCTGCGAATATTGGGCTGTTGCAAACTATCTGCCCACCTAATACTCCGGTGTATATCGATT
TCTTTGCACACATGTCCCTATGGGAAGGAATTCGTGCTGCTGGAGCTCATGCTTACCCGTTTATGCACAACAACATGAAT
CACCTGCGTAAACAGATCCAACGTAATGGATCAGGCGTGATTGTGGTCGACTCTGTTTATAGCACCATTGGCACTATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCTTTGGTCGTTGATGAGTCGCACTCGTTAGGTACTC
ATGGTAAAAATGGGGCGGGTTTGGTTCAATCTTTAGGGCTGACCAACAAAGTGGATTTTATTACCGTGAGTTTAGCCAAG
ACATTCGCTTATCGTGCCGGTGCCATTCTTGGACCTAAACGGCTGTCAGAGACCCTTCCATTTGTCGCTTACCCCGCGAT
TTTCAGCTCTACCGTGCTGCCACAAGAAGTCATTCGCTTAGAAAAAACGTTAGAGGTAATCAAAAACTCTGATGATAAGC
GAGACACCTTATTCAAACGAGTCAAAACGCTCACAACAGGCCTAAAACAAATAGGCTTTAACATTCGTAGCGAGTCACAA
ATCGTGGCCTTAGAATGCGGTAGCGAAAGAAACACGGAGCATGTGCGTGACTTTCTCGAAGAGCGGAATGTGTTTGGTGC
TGTATTTTGTCGCCCTGCAACTGGAAAAAACAAGAACATCATCCGATTCTCAGTGAATGCTGACATGACTTCGCAAGATA
TAGACCACGTTCTCAGGGTATGCGATGAAGCATTTCATCACCCTGAGTTAGAGTTCATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55