Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB00_RS33120 Genome accession   NZ_CP107734
Coordinates   7174692..7175306 (+) Length   204 a.a.
NCBI ID   WP_406440231.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7169692..7180306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS33105 (OHB00_33105) - 7171809..7172753 (+) 945 WP_406440228.1 ABC transporter ATP-binding protein -
  OHB00_RS33110 (OHB00_33110) - 7172750..7173490 (+) 741 WP_406440230.1 ABC transporter permease -
  OHB00_RS33115 (OHB00_33115) - 7173496..7174695 (+) 1200 WP_406446096.1 sensor histidine kinase -
  OHB00_RS33120 (OHB00_33120) vraR 7174692..7175306 (+) 615 WP_406440231.1 response regulator transcription factor Regulator
  OHB00_RS33125 (OHB00_33125) - 7175519..7176382 (-) 864 WP_406440233.1 transglutaminase-like domain-containing protein -
  OHB00_RS33130 (OHB00_33130) - 7176433..7177446 (-) 1014 WP_406440235.1 GNAT family N-acetyltransferase -
  OHB00_RS33135 (OHB00_33135) fdxA 7177587..7177907 (+) 321 WP_089098949.1 ferredoxin -
  OHB00_RS33140 (OHB00_33140) - 7178037..7179131 (+) 1095 WP_406440237.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHB00_RS33145 (OHB00_33145) - 7179265..7179696 (-) 432 WP_406440239.1 ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21354.58 Da        Isoelectric Point: 4.9283

>NTDB_id=645153 OHB00_RS33120 WP_406440231.1 7174692..7175306(+) (vraR) [Streptomyces sp. NBC_00631]
MSSTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAARANAVDVALLDIEMPGCTGIEAAAQLHKALPAVK
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=645153 OHB00_RS33120 WP_406440231.1 7174692..7175306(+) (vraR) [Streptomyces sp. NBC_00631]
ATGAGCAGCACGATCAAGGTCCTCCTCGCCGAGGACCAGTCGATGGTCCGTGAGGCGCTGGCCGCCCTGCTGGGCCTGGA
GGACGACATCGAGGTCGTGGCCCAGGTCGCGCGCGGCGACGAGGTGCTGGCCGCGGCTCGGGCGAACGCCGTCGACGTGG
CCCTGCTCGACATCGAGATGCCGGGCTGCACGGGCATCGAGGCGGCGGCGCAGCTCCACAAGGCGCTGCCCGCCGTGAAG
CTGGTCGTCCTCACCACCTTCGGCCGCCCCGGCTATCTGCGCAGCGCGATGGAGGCGGGTGCCGACGCCTTCCTCGTCAA
GGACGCCCCCGCCGCCCAGCTCGCCGAGGCCGTCCGCAAGGTCCTCGCCGGCGAACGCGTCATCGACCCCACCCTCGCGG
CAGCCGCTCTCGCCGAGGGCGCCAACCCCCTCACCGACCGCGAGCGCGAGGTCCTGCGCGCGGCAGCCGACGGCTCGACG
AACGCGGAGCTGGCGGCAGCACTGCACCTCTCCCAGGGGACGGTCCGCAACTACCTCTCGACGGCCATCCAGAAGCTCGC
GGTACGCAACAGGGCGGAAGCGGTGCGGATCGCGCGGGAGAAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-119)

Bacterial regulatory proteins, luxR family (GerE)

(143-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.232

100

0.368