Detailed information NTG0645143

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: L0990_RS13490
• Genome accession: NZ_CP090843
• Coordinates: 3003161..3004165 (+)
• Length: 334 a.a.
• NCBI ID: WP_017055857.1
• Uniprot ID: A0A2N7JD19
• Organism: Vibrio kanaloae strain A6-11SW3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2998161..3009165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0990_RS13475 (L0990_13460)	-	2998519..2999808 (-)	1290	WP_017055854.1	malic enzyme-like NAD(P)-binding protein	-
L0990_RS13480 (L0990_13465)	rpmE	3000159..3000377 (-)	219	WP_017055855.1	50S ribosomal protein L31	-
L0990_RS13485 (L0990_13470)	priA	3000720..3002921 (+)	2202	WP_373937909.1	primosomal protein N'	-
L0990_RS13490 (L0990_13475)	cytR	3003161..3004165 (+)	1005	WP_017055857.1	DNA-binding transcriptional regulator CytR	Regulator
L0990_RS13495 (L0990_13480)	ftsN	3004288..3004821 (+)	534	WP_017055858.1	cell division protein FtsN	-
L0990_RS13500 (L0990_13485)	hslV	3005046..3005594 (+)	549	WP_017055859.1	ATP-dependent protease subunit HslV	-
L0990_RS13505 (L0990_13490)	hslU	3005653..3006993 (+)	1341	WP_146441576.1	HslU--HslV peptidase ATPase subunit	-
L0990_RS13510 (L0990_13495)	-	3007183..3008100 (+)	918	WP_029626911.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
L0990_RS13515 (L0990_13500)	rraA	3008174..3008689 (+)	516	WP_017055862.1	ribonuclease E activity regulator RraA	-
L0990_RS13520 (L0990_13505)	zapB	3008769..3009011 (-)	243	WP_009848877.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36548.06 Da
• Isoelectric Point: 6.8459

>NTDB_id=645143 L0990_RS13490 WP_017055857.1 3003161..3004165(+) (cytR) [Vibrio kanaloae strain A6-11SW3]
MATMKDVAQLAGVSTATVSRALMTPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGTKAVRQLLALPEQPTA
IFCHNDSMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQTGSRLLE
AKLVVRGSTAPPRI

Nucleotide

• Length: 1005 bp

>NTDB_id=645143 L0990_RS13490 WP_017055857.1 3003161..3004165(+) (cytR) [Vibrio kanaloae strain A6-11SW3]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGACCCCAGAGAA
AGTCTCAGTTTCTACTCGCAAACGAGTAGAGGCAGCAGTACTTGAAGCTGGATACTCACCCAACACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATTACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCAGCTGTAGAAAATGATTACCTAGTTCTGCTTGGCGACAGTGGTCAACAGAAGAAACGTGAATCATCATT
CGTAAACTTGGTGTTCACCAAACAGGCTGATGGCATGCTACTGCTTGGCACCGACCACCCATTTGATGTCAGTAAATCTG
AACAGAAGAACTTACCACCTATGGTGATGGCATGTGAGTTTGCACCTGAACTTGAGTTGCCAACGGTACACATCGATAAC
TTGACGTCTGCATTTGAAGCCGTCAACTACCTAGCTCAGTTAGGTCATAAGCGCATCGCACAAATATCCGGCCCAACCTC
CGCCACTCTATGTAAATTCCGCCAGCAAGGCTATCAACAGGCATTGCGCCGGGCTGGTGTATCAATGAACCCAGCTTACA
GTACTGTTGGTGATTTTACCTTTGAAGCTGGAACAAAAGCCGTTCGTCAATTATTAGCACTACCGGAACAACCAACCGCA
ATTTTCTGTCATAACGATTCAATGGCAATTGGCGCTATTCAAGAAGCAAAAAAATTAGGTTTGCGTGTTCCTCAAGATCT
CTCCATTGTTGGTTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTAACGACCATTTCTCAGCCTCGTTACG
AAATCGGACGCCAAGCGATGCTGATGATGCTCGACCTACTTAAAGGTAACGATGTTCAAACAGGTTCACGCCTACTTGAA
GCTAAACTCGTGGTTCGTGGCAGTACAGCGCCACCTCGAATTTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A2N7JD19

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	88.855	99.401	0.883
cytR	Vibrio parahaemolyticus RIMD 2210633	87.087	99.701	0.868