Detailed information NTG0645133

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: L0990_RS11980
• Genome accession: NZ_CP090843
• Coordinates: 2717806..2718786 (-)
• Length: 326 a.a.
• NCBI ID: WP_373937787.1
• Uniprot ID: -
• Organism: Vibrio kanaloae strain A6-11SW3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2712806..2723786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0990_RS11965 (L0990_11960)	recA	2713331..2714371 (-)	1041	WP_017056586.1	recombinase RecA	Machinery gene
L0990_RS11970 (L0990_11965)	pncC	2714511..2715005 (-)	495	WP_017056585.1	nicotinamide-nucleotide amidase	-
L0990_RS11975 (L0990_11970)	mutS	2715129..2717690 (+)	2562	WP_017056584.1	DNA mismatch repair protein MutS	-
L0990_RS11980 (L0990_11975)	rpoS	2717806..2718786 (-)	981	WP_373937787.1	RNA polymerase sigma factor RpoS	Regulator
L0990_RS11985 (L0990_11980)	nlpD	2718885..2719799 (-)	915	WP_233894660.1	murein hydrolase activator NlpD	-
L0990_RS11990 (L0990_11985)	-	2719835..2720461 (-)	627	WP_017056581.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
L0990_RS11995 (L0990_11990)	surE	2720462..2721205 (-)	744	WP_136979137.1	5'/3'-nucleotidase SurE	-
L0990_RS12000 (L0990_11995)	truD	2721281..2722327 (-)	1047	WP_373937789.1	tRNA pseudouridine(13) synthase TruD	-
L0990_RS12005 (L0990_12000)	ispF	2722350..2722829 (-)	480	WP_017056578.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
L0990_RS12010 (L0990_12005)	ispD	2722832..2723533 (-)	702	WP_046223293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37246.52 Da
• Isoelectric Point: 5.2675

>NTDB_id=645133 L0990_RS11980 WP_373937787.1 2717806..2718786(-) (rpoS) [Vibrio kanaloae strain A6-11SW3]
MSISNAVTKEEFDLVQVTTEPETLGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPD
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=645133 L0990_RS11980 WP_373937787.1 2717806..2718786(-) (rpoS) [Vibrio kanaloae strain A6-11SW3]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGTCCAAGTAACCACGGAACCGGAAACACTTGGAAAAGC
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCCTAGATGCCACTCAACTTT
ATCTAGGCGAGATCGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATAGAAAGTAACCTGCGTTTAGTGGTAAAGATTTCACGTCGTTATAGCAATCGCGGTTT
AGCACTTCTCGATCTAATTGAAGAAGGCAACTTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAACGTGGTTTCC
GTTTTTCGACTTACGCGACATGGTGGATTCGTCAAACTATTGAACGTGCGTTGATGAATCAGACTCGGACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAGATCGCTTCTAAGCTAGATAAACCCGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAC
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATATTCTGGCTTGATGAGCTTAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGATTGCTTGGTTATGAACCGTCAACACTAGAAGAAGTTGGTCGTGAAATCAGCCTGACTCGTGAGC
GTGTTCGTCAAATTCAAGTTGAAGGTTTGCGCCGTTTACGTGAGATTCTGATCAAACAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.138	100	0.831