Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L0990_RS11855 Genome accession   NZ_CP090843
Coordinates   2695959..2696477 (-) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio kanaloae strain A6-11SW3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690959..2701477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS11830 (L0990_11825) rimM 2691027..2691581 (-) 555 WP_017056602.1 ribosome maturation factor RimM -
  L0990_RS11835 (L0990_11830) rpsP 2691606..2691854 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  L0990_RS11840 (L0990_11835) ffh 2692066..2693451 (-) 1386 WP_102507341.1 signal recognition particle protein -
  L0990_RS11845 (L0990_11840) - 2693652..2694446 (+) 795 WP_017056599.1 inner membrane protein YpjD -
  L0990_RS11850 (L0990_11845) - 2694575..2695846 (+) 1272 WP_017056598.1 HlyC/CorC family transporter -
  L0990_RS11855 (L0990_11850) luxS 2695959..2696477 (-) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  L0990_RS11860 (L0990_11855) - 2696502..2697152 (-) 651 WP_373937779.1 hypothetical protein -
  L0990_RS11865 (L0990_11860) gshA 2697163..2698731 (-) 1569 WP_373937781.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=645130 L0990_RS11855 WP_017056597.1 2695959..2696477(-) (luxS) [Vibrio kanaloae strain A6-11SW3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=645130 L0990_RS11855 WP_017056597.1 2695959..2696477(-) (luxS) [Vibrio kanaloae strain A6-11SW3]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCAGCCGTTCGTGTCGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACTTGCGTTTTACCGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACGCTAGAGCACCTATACGCTGGATTCATGCGTAATCAATTGAACGGCTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACTGGCTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCAGACGGATGGTTGGCTGC
AATGCAAGACGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAACGCGATCATCGCTGCAGGTATTTCTGTAAACAAGAATGATGAACTGGCA
TTGCCAGAGTCTATGCTTCAAGAGCTTAAAATTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89