Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB00_RS17990 Genome accession   NZ_CP107734
Coordinates   3939326..3939991 (-) Length   221 a.a.
NCBI ID   WP_406435916.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934326..3944991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS17980 (OHB00_17925) - 3936760..3937740 (+) 981 WP_406435915.1 hypothetical protein -
  OHB00_RS17985 (OHB00_17930) clpX 3937834..3939123 (-) 1290 WP_360238737.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB00_RS17990 (OHB00_17935) clpP 3939326..3939991 (-) 666 WP_406435916.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB00_RS17995 (OHB00_17940) clpP 3940067..3940672 (-) 606 WP_406445831.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB00_RS18000 (OHB00_17945) tig 3940985..3942373 (-) 1389 WP_406435917.1 trigger factor -
  OHB00_RS18015 (OHB00_17960) - 3942954..3943148 (-) 195 WP_093503029.1 hypothetical protein -
  OHB00_RS18020 (OHB00_17965) - 3943625..3944767 (+) 1143 WP_406445833.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24595.96 Da        Isoelectric Point: 4.5670

>NTDB_id=645119 OHB00_RS17990 WP_406435916.1 3939326..3939991(-) (clpP) [Streptomyces sp. NBC_00631]
MSNFPVAADARYDGPRPDARYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
NEFTRMRTQLEEMLAKHSNRPIEQVRDDIERDKILTAEEALEYGIVDQIISTRKMNNADVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=645119 OHB00_RS17990 WP_406435916.1 3939326..3939991(-) (clpP) [Streptomyces sp. NBC_00631]
ATGAGCAACTTCCCCGTCGCCGCCGACGCCCGTTACGACGGTCCGCGGCCCGACGCCCGCTACGTCATCCCGCGCTTCGT
CGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGGGACATCTCG
ATCTACATCAACAGCCCGGGCGGCGACATGACCGCCCTCACGGCGATCTACGACACGATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCGGCAAGCGCATGGCGC
TGCCGAACTCCCGCGTGCTGATCCACCAGCCGGCCGGCTCCACCGGCCGCGGCCAGCTCTCCGACCTGGAGATCATCGCC
AACGAGTTCACCCGGATGCGCACGCAGCTGGAGGAGATGCTGGCCAAGCACTCCAACCGGCCGATCGAGCAGGTCCGCGA
CGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAAGCGCTGGAGTACGGCATCGTGGACCAGATCATCTCCACCCGGA
AGATGAACAACGCTGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

85.973

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

85.068

0.416
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

88.688

0.398
  clpP Streptococcus thermophilus LMG 18311

45.128

88.235

0.398
  clpP Streptococcus thermophilus LMD-9

45.128

88.235

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

88.688

0.389
  clpP Streptococcus mutans UA159

44.103

88.235

0.389
  clpP Streptococcus pneumoniae D39

43.367

88.688

0.385
  clpP Streptococcus pneumoniae R6

43.367

88.688

0.385
  clpP Streptococcus pneumoniae TIGR4

43.367

88.688

0.385
  clpP Streptococcus pneumoniae Rx1

43.367

88.688

0.385
  clpP Streptococcus pyogenes JRS4

43.077

88.235

0.38
  clpP Streptococcus pyogenes MGAS315

43.077

88.235

0.38