Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L0990_RS07765 Genome accession   NZ_CP090843
Coordinates   1772277..1773701 (+) Length   474 a.a.
NCBI ID   WP_136997817.1    Uniprot ID   A0A4U1YZC7
Organism   Vibrio kanaloae strain A6-11SW3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1767277..1778701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS07745 (L0990_07720) - 1768016..1768966 (+) 951 WP_077680479.1 chromosome partitioning protein ParA -
  L0990_RS07750 (L0990_07725) - 1768971..1770005 (-) 1035 WP_373937331.1 AraC family transcriptional regulator -
  L0990_RS07755 (L0990_07730) - 1770153..1771166 (+) 1014 WP_102506896.1 DUF2804 domain-containing protein -
  L0990_RS07760 (L0990_07735) - 1771221..1772069 (+) 849 WP_017057445.1 sterol desaturase family protein -
  L0990_RS07765 (L0990_07740) sbcB 1772277..1773701 (+) 1425 WP_136997817.1 exodeoxyribonuclease I Machinery gene
  L0990_RS07770 (L0990_07745) - 1773727..1774098 (+) 372 WP_017057447.1 CidA/LrgA family protein -
  L0990_RS07775 (L0990_07750) - 1774101..1774778 (+) 678 WP_017057448.1 LrgB family protein -
  L0990_RS07780 (L0990_07755) cdd 1775095..1775982 (+) 888 WP_373937335.1 cytidine deaminase -
  L0990_RS07785 (L0990_07760) purT 1776150..1777325 (+) 1176 WP_046224075.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  L0990_RS07790 (L0990_07765) - 1777443..1778096 (-) 654 WP_077680485.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54626.98 Da        Isoelectric Point: 4.9668

>NTDB_id=645119 L0990_RS07765 WP_136997817.1 1772277..1773701(+) (sbcB) [Vibrio kanaloae strain A6-11SW3]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITGITPQKAMTQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVTMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLDLDSEALRNRLYTKRTELAEDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=645119 L0990_RS07765 WP_136997817.1 1772277..1773701(+) (sbcB) [Vibrio kanaloae strain A6-11SW3]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCGGCAAAAGACCGTCCAAG
TCAGTTTGCGGGGGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTATTGCCAGCCTCCTGCTG
ATTATCTGCCTGCACCTGAGGCCGCATTGATCACTGGTATCACGCCACAAAAAGCAATGACTCAAGGCCTACCTGAACCT
GAGTTTATCGCTAAGATTCATGCCGAACTTGCTAAGCCAAACACCACAAGCCTTGGCTACAACAGCATCCGATTCGATGA
CGAAGTAACGAGATACACCTGTTACCGTAACTTCATTGATCCGTATGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGACGAAGGCTTCCCA
AGTTTCAAACTGGAACACCTCTCCGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
AACCATCGAATTAGCGAAGAAGCTTAAAGCCGCACAACCTAAAATGTTTGATTACCTCTATAACATGCGCCACAAGCGTA
AATTGAATGAGTTAGTCGACATCGTAACCATGACACCTCTAATGCACGTATCAGGCATGTTCGGCCGTGATTGTAATTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCCGTTATCGTGGTGGATTTAGCAAAAGATCCAAC
ACCTTTACTTGACCTAGATTCAGAAGCTTTACGTAACAGGCTCTATACTAAGCGCACTGAACTTGCTGAAGACGAGTTAC
CGGTACCAATCAAATTGGTTCATTTAAACAAGTGCCCTATTCTTGCGCCAGCAAAAACACTGACCGCAGAAAACGCGGAA
ACTATTGGTATCGACCGTCAGCAATGTTTGAAAAACTTGGCACTGTTACGCGAACATCCAGAAATACGTGAAAAATTGAT
TGGTTTGTACTCACAAGAAAGAGAGTACGAGAAGAGTGACGATGTCGACACTCACCTTTACGATGGTTTCTTCTCACCAG
CCGATAAAACGGCGATGAACATCATTCGTGAAACAGACCCGAACAACTTGGCGGCTTTAGATATTACTTTTAGTGACGAA
CGAATTAAGCCTTTGTTATTCCGTTATCGCGCTCGCCACTTCCCATGGACGCTCGACGAATCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAGTTCTATGAGAGCCGCTTAGAAGAGTATATGCTGAATCTAGAAAATCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCGATCTTAAAGGCGGTTTATCAGTACGTTGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U1YZC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.378

99.789

0.772