Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB00_RS17140 Genome accession   NZ_CP107734
Coordinates   3739661..3741589 (+) Length   642 a.a.
NCBI ID   WP_406435766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3734661..3746589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS17125 (OHB00_17070) - 3735854..3736159 (+) 306 WP_406435763.1 YtxH domain-containing protein -
  OHB00_RS17130 (OHB00_17075) - 3736309..3737763 (+) 1455 WP_406435764.1 FGGY-family carbohydrate kinase -
  OHB00_RS17135 (OHB00_17080) rcrP 3737928..3739661 (+) 1734 WP_406435765.1 ABC transporter ATP-binding protein Regulator
  OHB00_RS17140 (OHB00_17085) rcrQ 3739661..3741589 (+) 1929 WP_406435766.1 ABC transporter ATP-binding protein Regulator
  OHB00_RS17145 (OHB00_17090) - 3741777..3743033 (-) 1257 WP_406435767.1 RNA polymerase sigma factor -
  OHB00_RS17150 (OHB00_17095) dnaG 3743138..3745051 (-) 1914 WP_406435768.1 DNA primase -
  OHB00_RS17155 (OHB00_17100) - 3745200..3746462 (-) 1263 WP_406435769.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69706.12 Da        Isoelectric Point: 5.9523

>NTDB_id=645117 OHB00_RS17140 WP_406435766.1 3739661..3741589(+) (rcrQ) [Streptomyces sp. NBC_00631]
MAGPMGRMMAGGGPDQRSMDFKNSGKRLVARFKPERFTIYVLLVCVVASVTLNVIGPKILGKATDLVFAGVIGKQMPAGA
TKDQVLAGMRERGQGTVADMLKSTDFTPGKGIDFGQVGDVLLFALCTYVVAGLLMAVATRLVNRSVNRTMYRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAVMFWVSWLLALVALATVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPAELRGRVALE
HVSFRYDPEKPLIEDLSLTVDPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDITRMSRDELRAGIGMVLQDT
WLFGGSIAENIAYGSAREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLADGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=645117 OHB00_RS17140 WP_406435766.1 3739661..3741589(+) (rcrQ) [Streptomyces sp. NBC_00631]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGACTTCAAGAACTCGGGCAAACG
GCTGGTCGCCCGGTTCAAACCCGAACGGTTCACGATCTACGTGCTGCTGGTCTGCGTGGTCGCGAGCGTCACCCTCAACG
TGATCGGCCCCAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGTGTCATCGGCAAGCAGATGCCCGCCGGGGCC
ACCAAGGACCAGGTGCTGGCGGGCATGCGCGAGCGCGGCCAGGGGACCGTCGCCGACATGCTCAAGAGCACCGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCCAGGTCGGCGACGTCCTGCTCTTCGCGCTCTGTACGTACGTCGTCGCGGGCCTGC
TGATGGCGGTGGCGACCCGGCTCGTCAACCGGTCCGTCAACCGCACGATGTACCGGCTGCGCGAGGACGTCCAGACGAAG
CTGTCCCGGCTCCCGCTGTCCTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCTCGCGCGCCACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGTGTGCTCGCGGTGATGT
TCTGGGTGTCCTGGCTGCTGGCCCTGGTCGCGCTGGCGACCGTGCCGCTGTCCTTCCTGGTCGCCACCCGCATCGGCAAG
CGCTCCCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGTCAGGACGAGTCCGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCCCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCC
GTCGTCGGCGGTCTGCGGGTCGCGTCGGGCGCGCTGTCCATCGGTGACGTGCAGGCATTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCCTCCATGGCCAACCTGGTGCAGTCCGGGGTCGCGTCGGCGGAGCGGATCTTCGAGC
TCCTGGACGCGGAGGAGCAGGAGGCCGACCCGGTGCCGGGCGAGCGTCCCGCCGAACTGCGCGGGCGGGTGGCGCTGGAG
CACGTCTCCTTCCGTTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCCCTGACGGTCGACCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTGAACCTCCTCATGCGGTTCTACGACGTCTCCGGCGGCCGGA
TCACCCTCGACGGCGTCGACATCACCCGCATGTCCCGGGACGAACTCCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGAGAACATCGCGTACGGCTCCGCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCCGACCGGTTCATCCGGACCCTGCCGGACGGCTACGACACCGTCATCGACGACGAGGGCACGG
GCGTCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTCGTCCTCGACGAG
GCGACGTCGTCGGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCGGACGGCCGCACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGGTCCATCGTGGAGCAGG
GCGCGCATGCCGAGCTCTTGGCGGCGGACGGTGCCTATGCACGGCTCTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

96.885

0.388