Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB00_RS17135 Genome accession   NZ_CP107734
Coordinates   3737928..3739661 (+) Length   577 a.a.
NCBI ID   WP_406435765.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732928..3744661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS17100 (OHB00_17045) - 3733273..3733692 (+) 420 WP_406435761.1 ester cyclase -
  OHB00_RS17105 (OHB00_17050) - 3734104..3734499 (+) 396 WP_406435762.1 nuclear transport factor 2 family protein -
  OHB00_RS17125 (OHB00_17070) - 3735854..3736159 (+) 306 WP_406435763.1 YtxH domain-containing protein -
  OHB00_RS17130 (OHB00_17075) - 3736309..3737763 (+) 1455 WP_406435764.1 FGGY-family carbohydrate kinase -
  OHB00_RS17135 (OHB00_17080) rcrP 3737928..3739661 (+) 1734 WP_406435765.1 ABC transporter ATP-binding protein Regulator
  OHB00_RS17140 (OHB00_17085) rcrQ 3739661..3741589 (+) 1929 WP_406435766.1 ABC transporter ATP-binding protein Regulator
  OHB00_RS17145 (OHB00_17090) - 3741777..3743033 (-) 1257 WP_406435767.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62385.48 Da        Isoelectric Point: 5.9200

>NTDB_id=645116 OHB00_RS17135 WP_406435765.1 3737928..3739661(+) (rcrP) [Streptomyces sp. NBC_00631]
MLIRLLRTYLRPYKKPISLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTDYILSLGGLMIGISLAQVACNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGISVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQGRFGKANKDLTEMQLATGNMLAL
MFPIVMTTVNVSSIAVVWFGAHRIDSGQMAIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTELRRHGHLEIRAAGFCYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVARLFDATDGSVLVDGEDVS
GLDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDNLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAESTVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMAGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=645116 OHB00_RS17135 WP_406435765.1 3737928..3739661(+) (rcrP) [Streptomyces sp. NBC_00631]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCTCCCTCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCCACGCTCAACGCGCACATCATCGACAACGGCGTCGTGAAGGGTGACACGGATTACA
TCCTGTCCCTGGGTGGCCTGATGATCGGCATCTCGCTGGCCCAGGTGGCGTGCAACATCGGTGCGGTGTACTACGGCGCC
CGGACCGCTTCGGCGCTCGGCCGGGACGTGCGGGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGTGAGGTAGG
TCACTTCGGGGCGCCCTCGCTCATCACCCGTACGACCAACGACGTACAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGTGTCGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTTCCGCTGTCCGGGGTG
CTGGTCGCCGTCGTACCCGTGCTCGGCATCTCGGTGACGCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGCTCCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGCGACG
AGTACGAACAGGGCCGGTTCGGGAAGGCCAACAAGGACCTGACCGAGATGCAGCTGGCCACCGGTAACATGCTCGCGCTG
ATGTTCCCGATCGTCATGACGACGGTGAACGTGTCCTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CCAGATGGCGATCGGTGACCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTGCTGGACACCGAGTCGAGCGTCGTCCCG
CCGCTCGCGCCGGTCACCGAACTGCGCCGCCACGGCCACCTGGAGATCCGGGCCGCGGGGTTCTGCTACCCGGGCGCCGA
GGAGCCGGTGCTCAAGGCCGTCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCGCGCGCCTCTTCGACGCCACGGACGGCTCTGTCCTCGTGGACGGGGAGGACGTCTCC
GGGCTCGACCCGAAGCTGCTCGCCAGGACCGTCGGTCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGAACCGTGGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGGCTTCG
TCGACAATCTGGAGGGCGGCCTGAACGCGCCCATCGCCCAGGGCGGAACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTC
GCCATCGCCCGTACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCCGCCCTGCGCGCCGCGCTCGCCCAGGAGACGGCCGAGTCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCA
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGACGGGTCGTCGGCACCGGCCGCCACCACGAACTCATGGCCGGCAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.544

97.574

0.376