Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L0990_RS04915 Genome accession   NZ_CP090843
Coordinates   1082987..1084375 (+) Length   462 a.a.
NCBI ID   WP_017056505.1    Uniprot ID   A0A4U2D6J2
Organism   Vibrio kanaloae strain A6-11SW3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077987..1089375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS04895 (L0990_04870) rsxB 1078534..1079127 (-) 594 WP_046222688.1 electron transport complex subunit RsxB -
  L0990_RS04900 (L0990_04875) rsxA 1079130..1079708 (-) 579 WP_046222689.1 electron transport complex subunit RsxA -
  L0990_RS04910 (L0990_04885) uvrB 1080655..1082685 (+) 2031 WP_373938436.1 excinuclease ABC subunit UvrB -
  L0990_RS04915 (L0990_04890) luxO 1082987..1084375 (+) 1389 WP_017056505.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  L0990_RS04920 (L0990_04895) luxU 1084399..1084743 (+) 345 WP_017056506.1 quorum-sensing phosphorelay protein LuxU -
  L0990_RS04925 (L0990_04900) - 1084844..1085731 (-) 888 WP_017056507.1 YvcK family protein -
  L0990_RS04930 (L0990_04905) moaA 1086066..1087055 (+) 990 WP_137008757.1 GTP 3',8-cyclase MoaA -
  L0990_RS04935 (L0990_04910) moaB 1087412..1087924 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  L0990_RS04940 (L0990_04915) moaC 1087936..1088415 (+) 480 WP_017054953.1 cyclic pyranopterin monophosphate synthase MoaC -
  L0990_RS04945 (L0990_04920) moaD 1088412..1088657 (+) 246 WP_017054954.1 molybdopterin synthase sulfur carrier subunit -
  L0990_RS04950 (L0990_04925) moaE 1088660..1089133 (+) 474 WP_046222691.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51777.37 Da        Isoelectric Point: 6.5096

>NTDB_id=645114 L0990_RS04915 WP_017056505.1 1082987..1084375(+) (luxO) [Vibrio kanaloae strain A6-11SW3]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENRL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=645114 L0990_RS04915 WP_017056505.1 1082987..1084375(+) (luxO) [Vibrio kanaloae strain A6-11SW3]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCAGCGTTGTATCG
CTCTTATCTGACACCGCTCGAAATTGATATTAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGATCTAATTTTGTTAGATCTGCGTCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCTGAAGTCCCCGTTATCTTCATGACGGCTCATGGCTCGATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGACCGACTCCGTATTACGGTGAATAACGCGATACGCAAAGCCACTAAACTTAAGA
ACAGCTCTGAAAATCCGGGTAATCAAAACTACCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACC
ATCGATTCTGCCGCATCAAGTAAGGCGAGTATTTTTATCACAGGTGAAAGTGGTACCGGTAAAGAAGTATGTGCAGAAGC
CATTCATGCAGCGAGTAAGCGTGGTGATAAGCCTTTCATTGCGATTAACTGCGCGGCTATCCCTAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTCAAAGGTGCCTTTACGGGCGCAGCAACCGATCGCCAAGGTGCTGCTGAACTAGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTATGCGAAATGGATCTTGAATTGCAAACCAAGCTTCTGCGTTTCATTCAAACCGGCAC
CTTCCAAAAAGTCGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGCGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATCCCTCTTCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTCATCGAGATCGCATACTCGTTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCTTTCGTACGCTT
TGCTCAGGAAGTGTTGGATCGCTTTAATCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTTTTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTCCCACCTCCACTGAACCAGCCGATTGAGAATCGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACTGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGACGGTAATATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAGCCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2D6J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84