Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LT978_RS19690 Genome accession   NZ_CP090838
Coordinates   3936564..3936854 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3931564..3941854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS19675 (LT978_19670) - 3931787..3933112 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  LT978_RS19680 (LT978_19675) - 3933247..3934014 (-) 768 WP_004264700.1 TatD family hydrolase -
  LT978_RS19685 (LT978_19680) metG 3934090..3936081 (-) 1992 WP_139890525.1 methionine--tRNA ligase -
  LT978_RS19690 (LT978_19685) abrB 3936564..3936854 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  LT978_RS19695 (LT978_19690) rsmI 3936904..3937785 (-) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LT978_RS19700 (LT978_19695) - 3937760..3938059 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LT978_RS19705 (LT978_19700) - 3938046..3938789 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LT978_RS19710 (LT978_19705) yabA 3938850..3939209 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  LT978_RS19715 (LT978_19710) ricT 3939224..3940051 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  LT978_RS19720 (LT978_19715) holB 3940054..3941043 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  LT978_RS19725 (LT978_19720) - 3941055..3941495 (-) 441 WP_004264730.1 DUF327 family protein -
  LT978_RS19730 (LT978_19725) darA 3941508..3941837 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=645105 LT978_RS19690 WP_169510469.1 3936564..3936854(+) (abrB) [Bacillus amyloliquefaciens strain TL106]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=645105 LT978_RS19690 WP_169510469.1 3936564..3936854(+) (abrB) [Bacillus amyloliquefaciens strain TL106]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979