Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LT978_RS18130 Genome accession   NZ_CP090838
Coordinates   3651340..3651777 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3646340..3656777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS18115 (LT978_18110) - 3649198..3649560 (-) 363 WP_003156585.1 helix-turn-helix domain-containing protein -
  LT978_RS18120 (LT978_18115) hxlA 3649792..3650427 (+) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  LT978_RS18125 (LT978_18120) hxlB 3650424..3650981 (+) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  LT978_RS18130 (LT978_18125) nucA/comI 3651340..3651777 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LT978_RS18135 (LT978_18130) nin/comJ 3651799..3652197 (+) 399 WP_014304317.1 competence protein ComJ Regulator
  LT978_RS18140 (LT978_18135) - 3652238..3652456 (-) 219 Protein_3575 family 1 glycosylhydrolase -
  LT978_RS20195 - 3652488..3652733 (-) 246 WP_109567708.1 family 1 glycosylhydrolase -
  LT978_RS18145 (LT978_18140) - 3652675..3652995 (-) 321 WP_014304315.1 YckD family protein -
  LT978_RS18150 (LT978_18145) - 3653067..3653501 (-) 435 WP_003156592.1 RDD family protein -
  LT978_RS18155 (LT978_18150) - 3653516..3654652 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  LT978_RS18160 (LT978_18155) - 3654717..3655919 (-) 1203 WP_139890341.1 GTP-binding protein -
  LT978_RS18165 (LT978_18160) - 3656036..3656197 (+) 162 Protein_3581 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=645100 LT978_RS18130 WP_003156588.1 3651340..3651777(+) (nucA/comI) [Bacillus amyloliquefaciens strain TL106]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=645100 LT978_RS18130 WP_003156588.1 3651340..3651777(+) (nucA/comI) [Bacillus amyloliquefaciens strain TL106]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641