Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   LT978_RS18100 Genome accession   NZ_CP090838
Coordinates   3634560..3634724 (-) Length   54 a.a.
NCBI ID   WP_269465305.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629560..3639724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS18100 (LT978_18095) comS 3634560..3634724 (-) 165 WP_269465305.1 competence protein ComS Regulator
  LT978_RS18105 (LT978_18100) srfAB 3634741..3637833 (-) 3093 Protein_3568 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6264.26 Da        Isoelectric Point: 11.7559

>NTDB_id=645099 LT978_RS18100 WP_269465305.1 3634560..3634724(-) (comS) [Bacillus amyloliquefaciens strain TL106]
MRPRRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=645099 LT978_RS18100 WP_269465305.1 3634560..3634724(-) (comS) [Bacillus amyloliquefaciens strain TL106]
ATGAGACCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5