Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LT978_RS17915 Genome accession   NZ_CP090838
Coordinates   3589601..3590554 (-) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584601..3595554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS17895 (LT978_17890) - 3585480..3586904 (+) 1425 WP_139890333.1 MDR family MFS transporter -
  LT978_RS17900 (LT978_17895) - 3586946..3587890 (-) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  LT978_RS17905 (LT978_17900) - 3587912..3588670 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  LT978_RS17910 (LT978_17905) - 3588664..3589611 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  LT978_RS17915 (LT978_17910) ceuB 3589601..3590554 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  LT978_RS17920 (LT978_17915) - 3590969..3592333 (+) 1365 WP_003156333.1 aspartate kinase -
  LT978_RS17925 (LT978_17920) - 3592428..3592523 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  LT978_RS17930 (LT978_17925) phrC 3592673..3592792 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LT978_RS17935 (LT978_17930) rapC 3592776..3593924 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  LT978_RS17940 (LT978_17935) - 3594077..3595510 (-) 1434 WP_162130794.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=645096 LT978_RS17915 WP_003156332.1 3589601..3590554(-) (ceuB) [Bacillus amyloliquefaciens strain TL106]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=645096 LT978_RS17915 WP_003156332.1 3589601..3590554(-) (ceuB) [Bacillus amyloliquefaciens strain TL106]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCTCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGATATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533