Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB00_RS03035 Genome accession   NZ_CP107734
Coordinates   593145..593807 (-) Length   220 a.a.
NCBI ID   WP_406430917.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 588145..598807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS03010 (OHB00_02990) - 588502..589176 (-) 675 WP_406430907.1 formylglycine-generating enzyme family protein -
  OHB00_RS03015 (OHB00_02995) - 589295..590347 (-) 1053 WP_406430909.1 NAD-dependent epimerase/dehydratase family protein -
  OHB00_RS03020 (OHB00_03000) - 590401..591042 (-) 642 WP_406430911.1 hypothetical protein -
  OHB00_RS03025 (OHB00_03005) - 591143..591544 (-) 402 WP_406430913.1 hypothetical protein -
  OHB00_RS03030 (OHB00_03010) - 591541..592677 (-) 1137 WP_406430915.1 molybdopterin-dependent oxidoreductase -
  OHB00_RS03035 (OHB00_03015) vraR 593145..593807 (-) 663 WP_406430917.1 response regulator Regulator
  OHB00_RS03040 (OHB00_03020) - 593804..594961 (-) 1158 WP_406430919.1 sensor histidine kinase -
  OHB00_RS03045 (OHB00_03025) - 595152..595916 (+) 765 WP_406430921.1 hypothetical protein -
  OHB00_RS03050 (OHB00_03030) - 596009..597916 (-) 1908 WP_406430923.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24130.07 Da        Isoelectric Point: 7.9550

>NTDB_id=645095 OHB00_RS03035 WP_406430917.1 593145..593807(-) (vraR) [Streptomyces sp. NBC_00631]
MTVKVLLADDQALVRMAFRSLLGTMPDITVVAEAADGRQAVDLARRTAPDVVLMDVRMPVMDGIEATRRITGASSCRVLI
LTTFDLDEYAFEGLRAGACGFLLKDVVPAVLHEAIRAVASGDAVLTPRITRDLVDRFAKSAPRPRDEAAGALFAQLTARE
RDVFHLIATGLTNAEIAQRLHLTEATVKTHITRILAKLQLRDRVQVVIFAYEHQLRPHGV

Nucleotide


Download         Length: 663 bp        

>NTDB_id=645095 OHB00_RS03035 WP_406430917.1 593145..593807(-) (vraR) [Streptomyces sp. NBC_00631]
ATGACCGTCAAGGTCCTCCTCGCCGACGACCAGGCGCTCGTCCGCATGGCGTTCCGCAGCCTGCTCGGCACCATGCCGGA
CATCACGGTCGTCGCGGAGGCCGCCGACGGCCGGCAGGCCGTCGACCTCGCCCGGCGGACGGCACCGGACGTGGTCCTCA
TGGACGTGCGCATGCCCGTCATGGACGGAATCGAGGCGACCCGGCGCATCACGGGCGCCTCGTCCTGCCGTGTCCTCATC
CTGACCACCTTCGACCTCGACGAGTACGCCTTCGAAGGACTGCGGGCGGGAGCCTGCGGGTTCCTCCTCAAGGACGTCGT
ACCGGCAGTGCTGCACGAGGCGATCCGCGCCGTCGCCTCCGGCGACGCCGTGCTCACCCCGCGCATCACCCGTGACCTCG
TCGACCGCTTCGCCAAGTCCGCGCCCCGCCCGCGCGACGAGGCCGCCGGCGCCCTGTTCGCCCAGCTGACCGCCAGAGAA
CGGGATGTCTTCCACCTCATCGCCACCGGTCTGACGAACGCGGAGATCGCCCAGCGGCTCCACCTCACCGAGGCCACCGT
GAAGACCCACATCACCCGCATCCTGGCCAAGCTGCAGCTCCGGGACCGCGTACAGGTCGTGATCTTCGCCTACGAACACC
AACTGCGCCCGCACGGAGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.352

98.182

0.386