Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LT978_RS15060 Genome accession   NZ_CP090838
Coordinates   3074350..3075141 (-) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069350..3080141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS15020 (LT978_15015) - 3069619..3069954 (-) 336 WP_003155488.1 SdpI family protein -
  LT978_RS15025 (LT978_15020) - 3070040..3070567 (-) 528 WP_003155490.1 SH3 domain-containing protein -
  LT978_RS15030 (LT978_15025) - 3070699..3070968 (-) 270 WP_003155492.1 YfhJ family protein -
  LT978_RS15035 (LT978_15030) - 3071092..3071244 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LT978_RS15040 (LT978_15035) - 3071389..3072300 (+) 912 WP_003155497.1 serine protease -
  LT978_RS15045 (LT978_15040) - 3072263..3072652 (+) 390 WP_015388525.1 DUF2606 family protein -
  LT978_RS15050 (LT978_15045) - 3072692..3073885 (-) 1194 WP_025650229.1 MFS transporter -
  LT978_RS15055 (LT978_15050) - 3074032..3074343 (-) 312 WP_003155501.1 YfhH family protein -
  LT978_RS15060 (LT978_15055) recX 3074350..3075141 (-) 792 WP_003155502.1 recombination regulator RecX Regulator
  LT978_RS15065 (LT978_15060) - 3075233..3076132 (+) 900 WP_088037533.1 TIGR01777 family oxidoreductase -
  LT978_RS15070 (LT978_15065) - 3076190..3076300 (+) 111 WP_003155504.1 YfhE family protein -
  LT978_RS15075 (LT978_15070) - 3076371..3076562 (+) 192 WP_003155508.1 YfhD family protein -
  LT978_RS15080 (LT978_15075) - 3076601..3077185 (-) 585 WP_003155509.1 nitroreductase -
  LT978_RS15085 (LT978_15080) - 3077262..3078146 (-) 885 WP_003155510.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=645094 LT978_RS15060 WP_003155502.1 3074350..3075141(-) (recX) [Bacillus amyloliquefaciens strain TL106]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=645094 LT978_RS15060 WP_003155502.1 3074350..3075141(-) (recX) [Bacillus amyloliquefaciens strain TL106]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGTGATGACGTGAAAAAAGCCTTTAACCGCGCCGTTGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791