Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB00_RS01130 Genome accession   NZ_CP107734
Coordinates   213024..214043 (+) Length   339 a.a.
NCBI ID   WP_406430311.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00631     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 208024..219043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB00_RS01115 (OHB00_01105) - 209562..210389 (-) 828 WP_406430305.1 carbohydrate ABC transporter permease -
  OHB00_RS01120 (OHB00_01110) - 210392..211330 (-) 939 WP_406430307.1 carbohydrate ABC transporter permease -
  OHB00_RS01125 (OHB00_01115) - 211336..212739 (-) 1404 WP_406430309.1 ABC transporter substrate-binding protein -
  OHB00_RS01130 (OHB00_01120) cytR 213024..214043 (+) 1020 WP_406430311.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB00_RS01135 (OHB00_01125) - 214808..215288 (-) 481 Protein_225 ATP/GTP-binding protein -
  OHB00_RS01140 (OHB00_01130) - 215428..216057 (+) 630 Protein_226 transposase -
  OHB00_RS01145 (OHB00_01135) - 216236..217978 (-) 1743 WP_406430313.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36666.65 Da        Isoelectric Point: 5.4245

>NTDB_id=645090 OHB00_RS01130 WP_406430311.1 213024..214043(+) (cytR) [Streptomyces sp. NBC_00631]
MAQSSQKINMADVARAAGVSMATASRALNNESGVSEATRRRVLAVAEELSYVVSPEASRLAGGATGRVAVVVPHISRWFF
ATLLEGLEAVLRGADLDVLLYHVDGVEDRHDFFHRLPARRKVDAVVVLAFPVGEEEQRRLELMGVTIIAAGGQHAPYPNV
SIDDETAGRQAMDHLLFLGHRRIAMIAAVDPDQPEEVQPSGRSHAYYAALRDAGIPLDERLVVTVNWGGAEGADAMAKLL
SQPEPPTAVYAHSDEVALGAIRTLRRAGLRIPDDLSVIGIDDHPLAELTDLTTVRQPVREQGELAGRMLLSILRGEETER
DVVVSTQLVIRGSTAPPRR

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=645090 OHB00_RS01130 WP_406430311.1 213024..214043(+) (cytR) [Streptomyces sp. NBC_00631]
ATGGCGCAGAGCTCCCAGAAGATCAACATGGCGGACGTGGCCCGAGCGGCAGGCGTCTCGATGGCCACCGCCTCACGTGC
GCTCAACAACGAGAGCGGGGTCTCCGAAGCCACCCGACGCCGCGTTCTCGCGGTCGCCGAGGAACTGTCCTACGTGGTCT
CTCCCGAGGCGTCCCGCCTGGCGGGCGGCGCCACCGGCCGCGTCGCGGTGGTCGTGCCGCACATCTCCCGCTGGTTCTTC
GCGACCCTGCTGGAAGGGCTGGAGGCGGTCCTGCGCGGCGCCGACCTCGACGTGCTGCTCTACCACGTGGACGGCGTCGA
GGACCGGCACGACTTCTTCCATCGCCTCCCCGCCCGGCGCAAGGTCGATGCCGTCGTCGTCCTGGCCTTCCCGGTCGGCG
AGGAGGAACAGCGCCGCCTGGAACTCATGGGCGTCACCATCATCGCCGCAGGCGGCCAGCACGCCCCCTACCCGAACGTG
TCCATCGACGACGAGACCGCCGGCCGTCAGGCCATGGACCACCTGCTCTTCCTCGGCCATCGCCGCATCGCCATGATCGC
CGCCGTCGACCCCGACCAGCCCGAGGAGGTCCAGCCCTCCGGCCGCTCCCACGCCTACTACGCCGCCCTGCGCGACGCGG
GCATCCCGCTCGACGAACGCCTCGTCGTCACCGTCAACTGGGGCGGCGCCGAGGGGGCCGACGCCATGGCCAAGCTCCTC
AGCCAGCCCGAGCCGCCCACCGCCGTCTACGCCCACTCCGACGAAGTCGCCCTCGGCGCCATCCGCACTCTGCGCCGCGC
CGGCCTGCGCATCCCCGACGACCTCTCCGTCATCGGCATCGACGACCACCCGCTGGCCGAACTGACCGACCTCACCACCG
TGCGCCAGCCCGTCCGGGAGCAGGGGGAGCTCGCCGGACGCATGCTCCTGAGCATCCTGCGCGGCGAGGAGACCGAGCGT
GACGTGGTCGTGTCCACTCAGCTCGTCATCCGGGGCAGCACGGCGCCGCCGCGCAGGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.079

100

0.389
  cytR Vibrio cholerae C6706

36.07

100

0.363