Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LT978_RS13650 Genome accession   NZ_CP090838
Coordinates   2815941..2816132 (-) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain TL106     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810941..2821132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS13625 (LT978_13620) - 2811297..2812283 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  LT978_RS13630 (LT978_13625) - 2812457..2813242 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LT978_RS13635 (LT978_13630) fabF 2813326..2814564 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  LT978_RS13640 (LT978_13635) - 2814587..2815525 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  LT978_RS13645 (LT978_13640) - 2815693..2815911 (+) 219 WP_003155059.1 hypothetical protein -
  LT978_RS13650 (LT978_13645) comZ 2815941..2816132 (-) 192 WP_003155061.1 ComZ family protein Regulator
  LT978_RS13655 (LT978_13650) med 2816145..2817098 (-) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  LT978_RS13660 (LT978_13655) - 2817188..2817754 (-) 567 WP_003155065.1 hypothetical protein -
  LT978_RS13665 (LT978_13660) - 2817837..2818571 (-) 735 WP_015388450.1 hypothetical protein -
  LT978_RS13670 (LT978_13665) - 2818832..2819017 (+) 186 WP_003155069.1 YjzD family protein -
  LT978_RS13675 (LT978_13670) - 2819054..2819233 (-) 180 WP_003155070.1 YjzC family protein -
  LT978_RS13680 (LT978_13675) argF 2819309..2820280 (-) 972 WP_015388451.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=645085 LT978_RS13650 WP_003155061.1 2815941..2816132(-) (comZ) [Bacillus amyloliquefaciens strain TL106]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=645085 LT978_RS13650 WP_003155061.1 2815941..2816132(-) (comZ) [Bacillus amyloliquefaciens strain TL106]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794