Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LT978_RS12190 Genome accession   NZ_CP090838
Coordinates   2545006..2545470 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain TL106     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2540006..2550470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS12165 (LT978_12160) - 2540516..2541064 (-) 549 Protein_2409 hypothetical protein -
  LT978_RS12170 (LT978_12165) fadH 2541175..2541939 (-) 765 WP_139890272.1 2,4-dienoyl-CoA reductase -
  LT978_RS12175 (LT978_12170) - 2542083..2542946 (+) 864 WP_139890273.1 metallophosphoesterase -
  LT978_RS12180 (LT978_12175) - 2543021..2543515 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  LT978_RS12185 (LT978_12180) - 2543591..2544883 (+) 1293 WP_043867050.1 MFS transporter -
  LT978_RS12190 (LT978_12185) kre 2545006..2545470 (+) 465 WP_003154622.1 YkyB family protein Regulator
  LT978_RS12195 (LT978_12190) cheV 2545513..2546424 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  LT978_RS12200 (LT978_12195) - 2546613..2546774 (+) 162 WP_007409608.1 hypothetical protein -
  LT978_RS12205 (LT978_12200) - 2546975..2548144 (+) 1170 WP_007611083.1 aminotransferase A -
  LT978_RS12210 (LT978_12205) - 2548170..2549990 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=645078 LT978_RS12190 WP_003154622.1 2545006..2545470(+) (kre) [Bacillus amyloliquefaciens strain TL106]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=645078 LT978_RS12190 WP_003154622.1 2545006..2545470(+) (kre) [Bacillus amyloliquefaciens strain TL106]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929