Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LT978_RS12090 Genome accession   NZ_CP090838
Coordinates   2528996..2529592 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523996..2534592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS12065 (LT978_12060) mobB 2524372..2524893 (-) 522 WP_015388301.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  LT978_RS12070 (LT978_12065) glp 2524854..2526146 (-) 1293 WP_139890269.1 gephyrin-like molybdotransferase Glp -
  LT978_RS12075 (LT978_12070) - 2526164..2527183 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  LT978_RS12080 (LT978_12075) - 2527235..2527837 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  LT978_RS12085 (LT978_12080) - 2527983..2528975 (+) 993 WP_139890270.1 sporulation protein -
  LT978_RS12090 (LT978_12085) rok 2528996..2529592 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LT978_RS12095 (LT978_12090) - 2530044..2530502 (-) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  LT978_RS12100 (LT978_12095) - 2530790..2531596 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  LT978_RS12105 (LT978_12100) - 2531630..2531875 (-) 246 WP_139890271.1 YkuS family protein -
  LT978_RS12110 (LT978_12105) - 2531936..2533060 (-) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  LT978_RS12115 (LT978_12110) dapD 2533131..2533841 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LT978_RS12120 (LT978_12115) - 2533923..2534378 (-) 456 WP_003154599.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=645077 LT978_RS12090 WP_003154591.1 2528996..2529592(-) (rok) [Bacillus amyloliquefaciens strain TL106]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=645077 LT978_RS12090 WP_003154591.1 2528996..2529592(-) (rok) [Bacillus amyloliquefaciens strain TL106]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843