Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LT978_RS11980 Genome accession   NZ_CP090838
Coordinates   2508814..2509098 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503814..2514098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS11960 (LT978_11955) ade 2503920..2505653 (-) 1734 WP_109567464.1 adenine deaminase -
  LT978_RS11965 (LT978_11960) ktrC 2505802..2506467 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LT978_RS11970 (LT978_11965) - 2506508..2507335 (-) 828 WP_063174792.1 gamma-glutamylcyclotransferase family protein -
  LT978_RS11975 (LT978_11970) - 2507337..2508641 (-) 1305 WP_014304932.1 ATP-binding protein -
  LT978_RS11980 (LT978_11975) abrB 2508814..2509098 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LT978_RS11985 (LT978_11980) mreBH 2509367..2510374 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LT978_RS11990 (LT978_11985) - 2510446..2510580 (+) 135 WP_003154559.1 protein YkpC -
  LT978_RS11995 (LT978_11990) - 2510681..2511913 (+) 1233 WP_003154560.1 aminopeptidase -
  LT978_RS12000 (LT978_11995) - 2511943..2512851 (-) 909 WP_139890266.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=645076 LT978_RS11980 WP_024085249.1 2508814..2509098(-) (abrB) [Bacillus amyloliquefaciens strain TL106]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=645076 LT978_RS11980 WP_024085249.1 2508814..2509098(-) (abrB) [Bacillus amyloliquefaciens strain TL106]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543