Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LT978_RS10575 Genome accession   NZ_CP090838
Coordinates   2119450..2119884 (-) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2114450..2124884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS10540 (LT978_10535) - 2114462..2114815 (+) 354 WP_003154073.1 multidrug efflux SMR transporter -
  LT978_RS10545 (LT978_10540) - 2114829..2115281 (-) 453 WP_139890239.1 OsmC family protein -
  LT978_RS10550 (LT978_10545) - 2115342..2116049 (-) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  LT978_RS10555 (LT978_10550) - 2116305..2116538 (-) 234 WP_139890240.1 hypothetical protein -
  LT978_RS10560 (LT978_10555) - 2116718..2118046 (+) 1329 WP_024085327.1 S8 family peptidase -
  LT978_RS10565 (LT978_10560) - 2118239..2118601 (+) 363 WP_003154082.1 hypothetical protein -
  LT978_RS10570 (LT978_10565) - 2118635..2119390 (-) 756 WP_003154084.1 YoaK family protein -
  LT978_RS10575 (LT978_10570) nucA/comI 2119450..2119884 (-) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LT978_RS10580 (LT978_10575) - 2120173..2121384 (+) 1212 WP_032857407.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=645071 LT978_RS10575 WP_003154085.1 2119450..2119884(-) (nucA/comI) [Bacillus amyloliquefaciens strain TL106]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=645071 LT978_RS10575 WP_003154085.1 2119450..2119884(-) (nucA/comI) [Bacillus amyloliquefaciens strain TL106]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486