Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LT978_RS08835 Genome accession   NZ_CP090838
Coordinates   1747713..1748321 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742713..1753321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS08815 (LT978_08810) dnaD 1742949..1743647 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  LT978_RS08820 (LT978_08815) nth 1743666..1744325 (+) 660 WP_003153517.1 endonuclease III -
  LT978_RS08825 (LT978_08820) - 1744322..1744813 (+) 492 WP_046559838.1 YpoC family protein -
  LT978_RS08830 (LT978_08825) - 1744891..1747674 (-) 2784 WP_139890079.1 PBP1A family penicillin-binding protein -
  LT978_RS08835 (LT978_08830) recU 1747713..1748321 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  LT978_RS08840 (LT978_08835) - 1748363..1749325 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  LT978_RS08845 (LT978_08840) sspM 1749369..1749473 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LT978_RS08850 (LT978_08845) - 1749679..1749924 (+) 246 WP_014305286.1 DUF5446 family protein -
  LT978_RS08855 (LT978_08850) - 1749970..1750338 (+) 369 WP_003153529.1 YppE family protein -
  LT978_RS08860 (LT978_08855) - 1750377..1750559 (-) 183 WP_003153532.1 YppF family protein -
  LT978_RS08865 (LT978_08860) - 1750746..1751180 (+) 435 WP_003153534.1 YppG family protein -
  LT978_RS08870 (LT978_08865) - 1751210..1751623 (-) 414 WP_003153535.1 hypothetical protein -
  LT978_RS08875 (LT978_08870) - 1751762..1752268 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=645070 LT978_RS08835 WP_003153521.1 1747713..1748321(-) (recU) [Bacillus amyloliquefaciens strain TL106]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=645070 LT978_RS08835 WP_003153521.1 1747713..1748321(-) (recU) [Bacillus amyloliquefaciens strain TL106]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896