Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LT978_RS07770 Genome accession   NZ_CP090838
Coordinates   1501787..1502587 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain TL106     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496787..1507587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS07750 (LT978_07745) - 1496909..1497754 (+) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  LT978_RS07755 (LT978_07750) argR 1497851..1498300 (+) 450 WP_003153173.1 transcriptional regulator ArgR -
  LT978_RS07760 (LT978_07755) recN 1498332..1500062 (+) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  LT978_RS07765 (LT978_07760) spoIVB 1500226..1501506 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  LT978_RS07770 (LT978_07765) spo0A 1501787..1502587 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  LT978_RS07775 (LT978_07770) alr 1502735..1503916 (-) 1182 WP_025852858.1 alanine racemase -
  LT978_RS07780 (LT978_07775) - 1504091..1504303 (-) 213 WP_014305392.1 spore germination protein -
  LT978_RS07785 (LT978_07780) - 1504429..1504641 (-) 213 WP_003153183.1 spore germination protein -
  LT978_RS07790 (LT978_07785) - 1504767..1505885 (-) 1119 WP_139890056.1 NADH-dependent flavin oxidoreductase -
  LT978_RS07795 (LT978_07790) - 1505979..1506116 (-) 138 WP_162918042.1 hypothetical protein -
  LT978_RS07800 (LT978_07795) - 1506407..1507039 (-) 633 WP_014418348.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=645069 LT978_RS07770 WP_003153177.1 1501787..1502587(+) (spo0A) [Bacillus amyloliquefaciens strain TL106]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=645069 LT978_RS07770 WP_003153177.1 1501787..1502587(+) (spo0A) [Bacillus amyloliquefaciens strain TL106]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97