Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LT978_RS01755 Genome accession   NZ_CP090838
Coordinates   343151..344296 (-) Length   381 a.a.
NCBI ID   WP_088037228.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 338151..349296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS01710 (LT978_01705) speE 338442..339272 (+) 831 WP_003151052.1 spermidine synthase -
  LT978_RS01715 (LT978_01710) speB 339332..340204 (+) 873 WP_003151054.1 agmatinase -
  LT978_RS01720 (LT978_01715) - 340375..340593 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  LT978_RS01725 (LT978_01720) - 341184..341696 (-) 513 WP_003151059.1 stage II sporulation protein M -
  LT978_RS01730 (LT978_01725) - 341740..342021 (-) 282 WP_003151060.1 hypothetical protein -
  LT978_RS01735 (LT978_01730) - 342209..342394 (-) 186 Protein_344 DUF4177 domain-containing protein -
  LT978_RS01740 (LT978_01735) - 342429..342632 (-) 204 WP_003151062.1 hypothetical protein -
  LT978_RS01745 (LT978_01740) - 342646..342849 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  LT978_RS01750 (LT978_01745) - 343048..343167 (-) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  LT978_RS01755 (LT978_01750) rapF 343151..344296 (-) 1146 WP_088037228.1 tetratricopeptide repeat protein Regulator
  LT978_RS01760 (LT978_01755) - 344588..345016 (+) 429 WP_003151069.1 DUF1934 family protein -
  LT978_RS01765 (LT978_01760) argS 345013..346683 (+) 1671 WP_003151071.1 arginine--tRNA ligase -
  LT978_RS01770 (LT978_01765) narK 346818..348008 (+) 1191 WP_014306018.1 nitrate transporter NarK -
  LT978_RS01775 (LT978_01770) - 348106..348822 (+) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45325.46 Da        Isoelectric Point: 4.9264

>NTDB_id=645033 LT978_RS01755 WP_088037228.1 343151..344296(-) (rapF) [Bacillus amyloliquefaciens strain TL106]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=645033 LT978_RS01755 WP_088037228.1 343151..344296(-) (rapF) [Bacillus amyloliquefaciens strain TL106]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTCGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53