Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N4T39_RS17640 Genome accession   NZ_CP107720
Coordinates   3617922..3618527 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2021CK-01361     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3612922..3623527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T39_RS17620 (N4T39_17620) aes 3612960..3613919 (+) 960 Protein_3467 acetyl esterase -
  N4T39_RS17625 (N4T39_17625) hemH 3613916..3614878 (-) 963 WP_001250096.1 ferrochelatase -
  N4T39_RS17630 (N4T39_17630) adk 3615114..3615758 (-) 645 WP_001220233.1 adenylate kinase -
  N4T39_RS17635 (N4T39_17635) htpG 3615938..3617812 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  N4T39_RS17640 (N4T39_17640) recR 3617922..3618527 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N4T39_RS17645 (N4T39_17645) ybaB 3618527..3618856 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N4T39_RS17650 (N4T39_17650) dnaX 3618909..3620840 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  N4T39_RS17655 (N4T39_17655) apt 3620969..3621520 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N4T39_RS17660 (N4T39_17660) ybaN 3621673..3622050 (-) 378 WP_001188905.1 DUF454 family protein -
  N4T39_RS17665 (N4T39_17665) priC 3622120..3622647 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  N4T39_RS17670 (N4T39_17670) rsmS 3622661..3622822 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=644985 N4T39_RS17640 WP_001195025.1 3617922..3618527(-) (recR) [Escherichia coli strain 2021CK-01361]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=644985 N4T39_RS17640 WP_001195025.1 3617922..3618527(-) (recR) [Escherichia coli strain 2021CK-01361]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCCATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGTGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443